Chennubhotla CS - Search Results

1

QAARM: quasi-anharmonic autoregressive model reveals molecular recognition pathways in ubiquitin.

Savol AJ, Burger VM, Agarwal PK, Ramanathan A, Chennubhotla CS. Savol AJ, et al. Among authors: chennubhotla cs. Bioinformatics. 2011 Jul 1;27(13):i52-60. doi: 10.1093/bioinformatics/btr248. Bioinformatics. 2011. PMID: 21685101 Free PMC article.

2

Nhs: network-based hierarchical segmentation for cryo-electron microscopy density maps.

Burger V, Chennubhotla C. Burger V, et al. Biopolymers. 2012 Sep;97(9):732-41. doi: 10.1002/bip.22041. Biopolymers. 2012. PMID: 22696408 Free PMC article.

3

Discovering conformational sub-states relevant to protein function.

Ramanathan A, Savol AJ, Langmead CJ, Agarwal PK, Chennubhotla CS. Ramanathan A, et al. Among authors: chennubhotla cs. PLoS One. 2011 Jan 28;6(1):e15827. doi: 10.1371/journal.pone.0015827. PLoS One. 2011. PMID: 21297978 Free PMC article.

4

Quasi-anharmonic analysis reveals intermediate states in the nuclear co-activator receptor binding domain ensemble.

Burger VM, Ramanathan A, Savol AJ, Stanley CB, Agarwal PK, Chennubhotla CS. Burger VM, et al. Among authors: chennubhotla cs. Pac Symp Biocomput. 2012:70-81. Pac Symp Biocomput. 2012. PMID: 22174264 Free PMC article.

5

Conformational Sub-states and Populations in Enzyme Catalysis.

Agarwal PK, Doucet N, Chennubhotla C, Ramanathan A, Narayanan C. Agarwal PK, et al. Methods Enzymol. 2016;578:273-97. doi: 10.1016/bs.mie.2016.05.023. Epub 2016 Jul 9. Methods Enzymol. 2016. PMID: 27497171 Free PMC article. Review.

6

Event detection and sub-state discovery from biomolecular simulations using higher-order statistics: application to enzyme adenylate kinase.

Ramanathan A, Savol AJ, Agarwal PK, Chennubhotla CS. Ramanathan A, et al. Among authors: chennubhotla cs. Proteins. 2012 Nov;80(11):2536-51. doi: 10.1002/prot.24135. Epub 2012 Aug 8. Proteins. 2012. PMID: 22733562 Free PMC article.

7

Protein conformational populations and functionally relevant substates.

Ramanathan A, Savol A, Burger V, Chennubhotla CS, Agarwal PK. Ramanathan A, et al. Among authors: chennubhotla cs. Acc Chem Res. 2014 Jan 21;47(1):149-56. doi: 10.1021/ar400084s. Epub 2013 Aug 29. Acc Chem Res. 2014. PMID: 23988159 Review.

8

Quantifying the Sources of Kinetic Frustration in Folding Simulations of Small Proteins.

Savol AJ, Chennubhotla CS. Savol AJ, et al. Among authors: chennubhotla cs. J Chem Theory Comput. 2014 Aug 12;10(8):2964-2974. doi: 10.1021/ct500361w. Epub 2014 Jun 13. J Chem Theory Comput. 2014. PMID: 25136267 Free PMC article.

9

Approximating frustration scores in complex networks via perturbed Laplacian spectra.

Savol AJ, Chennubhotla CS. Savol AJ, et al. Among authors: chennubhotla cs. Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Dec;92(6):062806. doi: 10.1103/PhysRevE.92.062806. Epub 2015 Dec 4. Phys Rev E Stat Nonlin Soft Matter Phys. 2015. PMID: 26764743 Free PMC article.

10

Conservation of Dynamics Associated with Biological Function in an Enzyme Superfamily.

Narayanan C, Bernard DN, Bafna K, Gagné D, Chennubhotla CS, Doucet N, Agarwal PK. Narayanan C, et al. Among authors: chennubhotla cs. Structure. 2018 Mar 6;26(3):426-436.e3. doi: 10.1016/j.str.2018.01.015. Epub 2018 Feb 22. Structure. 2018. PMID: 29478822 Free PMC article.

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