Savol AJ - Search Results

1

QAARM: quasi-anharmonic autoregressive model reveals molecular recognition pathways in ubiquitin.

Savol AJ, Burger VM, Agarwal PK, Ramanathan A, Chennubhotla CS. Savol AJ, et al. Bioinformatics. 2011 Jul 1;27(13):i52-60. doi: 10.1093/bioinformatics/btr248. Bioinformatics. 2011. PMID: 21685101 Free PMC article.

2

Discovering conformational sub-states relevant to protein function.

Ramanathan A, Savol AJ, Langmead CJ, Agarwal PK, Chennubhotla CS. Ramanathan A, et al. Among authors: savol aj. PLoS One. 2011 Jan 28;6(1):e15827. doi: 10.1371/journal.pone.0015827. PLoS One. 2011. PMID: 21297978 Free PMC article.

3

Quasi-anharmonic analysis reveals intermediate states in the nuclear co-activator receptor binding domain ensemble.

Burger VM, Ramanathan A, Savol AJ, Stanley CB, Agarwal PK, Chennubhotla CS. Burger VM, et al. Among authors: savol aj. Pac Symp Biocomput. 2012:70-81. Pac Symp Biocomput. 2012. PMID: 22174264 Free PMC article.

4

Protein conformational populations and functionally relevant substates.

Ramanathan A, Savol A, Burger V, Chennubhotla CS, Agarwal PK. Ramanathan A, et al. Acc Chem Res. 2014 Jan 21;47(1):149-56. doi: 10.1021/ar400084s. Epub 2013 Aug 29. Acc Chem Res. 2014. PMID: 23988159 Review.

5

Event detection and sub-state discovery from biomolecular simulations using higher-order statistics: application to enzyme adenylate kinase.

Ramanathan A, Savol AJ, Agarwal PK, Chennubhotla CS. Ramanathan A, et al. Among authors: savol aj. Proteins. 2012 Nov;80(11):2536-51. doi: 10.1002/prot.24135. Epub 2012 Aug 8. Proteins. 2012. PMID: 22733562 Free PMC article.

6

Quantifying the Sources of Kinetic Frustration in Folding Simulations of Small Proteins.

Savol AJ, Chennubhotla CS. Savol AJ, et al. J Chem Theory Comput. 2014 Aug 12;10(8):2964-2974. doi: 10.1021/ct500361w. Epub 2014 Jun 13. J Chem Theory Comput. 2014. PMID: 25136267 Free PMC article.

7

Approximating frustration scores in complex networks via perturbed Laplacian spectra.

Savol AJ, Chennubhotla CS. Savol AJ, et al. Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Dec;92(6):062806. doi: 10.1103/PhysRevE.92.062806. Epub 2015 Dec 4. Phys Rev E Stat Nonlin Soft Matter Phys. 2015. PMID: 26764743 Free PMC article.

8

Modeling boundary conditions for balanced proliferation in metastatic latency.

Taylor DP, Wells JZ, Savol A, Chennubhotla C, Wells A. Taylor DP, et al. Clin Cancer Res. 2013 Mar 1;19(5):1063-70. doi: 10.1158/1078-0432.CCR-12-3180. Epub 2013 Jan 17. Clin Cancer Res. 2013. PMID: 23329811 Free PMC article.

9

Genome-wide identification of autosomal genes with allelic imbalance of chromatin state.

Savol AJ, Wang PI, Jeon Y, Colognori D, Yildirim E, Pinter SF, Payer B, Lee JT, Sadreyev RI. Savol AJ, et al. PLoS One. 2017 Aug 10;12(8):e0182568. doi: 10.1371/journal.pone.0182568. eCollection 2017. PLoS One. 2017. PMID: 28796844 Free PMC article.

10

Mutation of a nucleosome compaction region disrupts Polycomb-mediated axial patterning.

Lau MS, Schwartz MG, Kundu S, Savol AJ, Wang PI, Marr SK, Grau DJ, Schorderet P, Sadreyev RI, Tabin CJ, Kingston RE. Lau MS, et al. Among authors: savol aj. Science. 2017 Mar 10;355(6329):1081-1084. doi: 10.1126/science.aah5403. Epub 2017 Mar 9. Science. 2017. PMID: 28280206 Free PMC article.

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