Leek JT - Search Results

1

Sequencing technology does not eliminate biological variability.

Hansen KD, Wu Z, Irizarry RA, Leek JT. Hansen KD, et al. Among authors: leek jt. Nat Biotechnol. 2011 Jul 11;29(7):572-3. doi: 10.1038/nbt.1910. Nat Biotechnol. 2011. PMID: 21747377 Free PMC article.

2

Cloud-scale RNA-sequencing differential expression analysis with Myrna.

Langmead B, Hansen KD, Leek JT. Langmead B, et al. Among authors: leek jt. Genome Biol. 2010;11(8):R83. doi: 10.1186/gb-2010-11-8-r83. Epub 2010 Aug 11. Genome Biol. 2010. PMID: 20701754 Free PMC article.

3

Tackling the widespread and critical impact of batch effects in high-throughput data.

Leek JT, Scharpf RB, Bravo HC, Simcha D, Langmead B, Johnson WE, Geman D, Baggerly K, Irizarry RA. Leek JT, et al. Nat Rev Genet. 2010 Oct;11(10):733-9. doi: 10.1038/nrg2825. Epub 2010 Sep 14. Nat Rev Genet. 2010. PMID: 20838408 Free PMC article. Review.

4

Significance analysis and statistical dissection of variably methylated regions.

Jaffe AE, Feinberg AP, Irizarry RA, Leek JT. Jaffe AE, et al. Among authors: leek jt. Biostatistics. 2012 Jan;13(1):166-78. doi: 10.1093/biostatistics/kxr013. Epub 2011 Jun 17. Biostatistics. 2012. PMID: 21685414 Free PMC article.

5

Bump hunting to identify differentially methylated regions in epigenetic epidemiology studies.

Jaffe AE, Murakami P, Lee H, Leek JT, Fallin MD, Feinberg AP, Irizarry RA. Jaffe AE, et al. Among authors: leek jt. Int J Epidemiol. 2012 Feb;41(1):200-9. doi: 10.1093/ije/dyr238. Int J Epidemiol. 2012. PMID: 22422453 Free PMC article.

6

Gene expression anti-profiles as a basis for accurate universal cancer signatures.

Bravo HC, Pihur V, McCall M, Irizarry RA, Leek JT. Bravo HC, et al. Among authors: leek jt. BMC Bioinformatics. 2012 Oct 22;13:272. doi: 10.1186/1471-2105-13-272. BMC Bioinformatics. 2012. PMID: 23088656 Free PMC article.

7

Differential expression analysis of RNA-seq data at single-base resolution.

Frazee AC, Sabunciyan S, Hansen KD, Irizarry RA, Leek JT. Frazee AC, et al. Among authors: leek jt. Biostatistics. 2014 Jul;15(3):413-26. doi: 10.1093/biostatistics/kxt053. Epub 2014 Jan 6. Biostatistics. 2014. PMID: 24398039 Free PMC article.

8

Rail-dbGaP: analyzing dbGaP-protected data in the cloud with Amazon Elastic MapReduce.

Nellore A, Wilks C, Hansen KD, Leek JT, Langmead B. Nellore A, et al. Among authors: leek jt. Bioinformatics. 2016 Aug 15;32(16):2551-3. doi: 10.1093/bioinformatics/btw177. Epub 2016 Apr 21. Bioinformatics. 2016. PMID: 27153614 Free PMC article.

9

Flexible expressed region analysis for RNA-seq with derfinder.

Collado-Torres L, Nellore A, Frazee AC, Wilks C, Love MI, Langmead B, Irizarry RA, Leek JT, Jaffe AE. Collado-Torres L, et al. Among authors: leek jt. Nucleic Acids Res. 2017 Jan 25;45(2):e9. doi: 10.1093/nar/gkw852. Epub 2016 Sep 29. Nucleic Acids Res. 2017. PMID: 27694310 Free PMC article.

10

Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive.

Nellore A, Jaffe AE, Fortin JP, Alquicira-Hernández J, Collado-Torres L, Wang S, Phillips RA III, Karbhari N, Hansen KD, Langmead B, Leek JT. Nellore A, et al. Among authors: leek jt. Genome Biol. 2016 Dec 30;17(1):266. doi: 10.1186/s13059-016-1118-6. Genome Biol. 2016. PMID: 28038678 Free PMC article.

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