Tidor B - Search Results

1

Systematic placement of structural water molecules for improved scoring of protein-ligand interactions.

Huggins DJ, Tidor B. Huggins DJ, et al. Among authors: tidor b. Protein Eng Des Sel. 2011 Oct;24(10):777-89. doi: 10.1093/protein/gzr036. Epub 2011 Jul 19. Protein Eng Des Sel. 2011. PMID: 21771870 Free PMC article.

2

Computation of electrostatic complements to proteins: a case of charge stabilized binding.

Chong LT, Dempster SE, Hendsch ZS, Lee LP, Tidor B. Chong LT, et al. Among authors: tidor b. Protein Sci. 1998 Jan;7(1):206-10. doi: 10.1002/pro.5560070122. Protein Sci. 1998. PMID: 9514276 Free PMC article.

3

Electrostatic interactions in the GCN4 leucine zipper: substantial contributions arise from intramolecular interactions enhanced on binding.

Hendsch ZS, Tidor B. Hendsch ZS, et al. Among authors: tidor b. Protein Sci. 1999 Jul;8(7):1381-92. doi: 10.1110/ps.8.7.1381. Protein Sci. 1999. PMID: 10422826 Free PMC article.

4

Optimization of binding electrostatics: charge complementarity in the barnase-barstar protein complex.

Lee LP, Tidor B. Lee LP, et al. Among authors: tidor b. Protein Sci. 2001 Feb;10(2):362-77. doi: 10.1110/ps.40001. Protein Sci. 2001. PMID: 11266622 Free PMC article.

5

Charge optimization leads to favorable electrostatic binding free energy.

Kangas E, Tidor B. Kangas E, et al. Among authors: tidor b. Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1999 May;59(5 Pt B):5958-61. doi: 10.1103/physreve.59.5958. Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1999. PMID: 11969577

6

A computational method for the analysis and prediction of protein:phosphopeptide-binding sites.

Joughin BA, Tidor B, Yaffe MB. Joughin BA, et al. Among authors: tidor b. Protein Sci. 2005 Jan;14(1):131-9. doi: 10.1110/ps.04964705. Epub 2004 Dec 2. Protein Sci. 2005. PMID: 15576564 Free PMC article.

7

Action-at-a-distance interactions enhance protein binding affinity.

Joughin BA, Green DF, Tidor B. Joughin BA, et al. Among authors: tidor b. Protein Sci. 2005 May;14(5):1363-9. doi: 10.1110/ps.041283105. Epub 2005 Mar 31. Protein Sci. 2005. PMID: 15802650 Free PMC article.

8

Design of improved protein inhibitors of HIV-1 cell entry: Optimization of electrostatic interactions at the binding interface.

Green DF, Tidor B. Green DF, et al. Among authors: tidor b. Proteins. 2005 Sep 1;60(4):644-57. doi: 10.1002/prot.20540. Proteins. 2005. PMID: 16001428

9

Optimal charges in lead progression: a structure-based neuraminidase case study.

Armstrong KA, Tidor B, Cheng AC. Armstrong KA, et al. Among authors: tidor b. J Med Chem. 2006 Apr 20;49(8):2470-7. doi: 10.1021/jm051105l. J Med Chem. 2006. PMID: 16610790

10

Specificity in molecular design: a physical framework for probing the determinants of binding specificity and promiscuity in a biological environment.

Radhakrishnan ML, Tidor B. Radhakrishnan ML, et al. Among authors: tidor b. J Phys Chem B. 2007 Nov 29;111(47):13419-35. doi: 10.1021/jp074285e. Epub 2007 Nov 3. J Phys Chem B. 2007. PMID: 17979267 Free PMC article.

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