Oehmen CS - Search Results

1

ScalaBLAST 2.0: rapid and robust BLAST calculations on multiprocessor systems.

Oehmen CS, Baxter DJ. Oehmen CS, et al. Bioinformatics. 2013 Mar 15;29(6):797-8. doi: 10.1093/bioinformatics/btt013. Epub 2013 Jan 29. Bioinformatics. 2013. PMID: 23361326 Free PMC article.

2

Inhibition of dengue virus infections in cell cultures and in AG129 mice by a small interfering RNA targeting a highly conserved sequence.

Stein DA, Perry ST, Buck MD, Oehmen CS, Fischer MA, Poore E, Smith JL, Lancaster AM, Hirsch AJ, Slifka MK, Nelson JA, Shresta S, Früh K. Stein DA, et al. Among authors: oehmen cs. J Virol. 2011 Oct;85(19):10154-66. doi: 10.1128/JVI.05298-11. Epub 2011 Jul 27. J Virol. 2011. PMID: 21795337 Free PMC article.

3

A model of cyclic transcriptomic behavior in the cyanobacterium Cyanothece sp. ATCC 51142.

McDermott JE, Oehmen CS, McCue LA, Hill E, Choi DM, Stöckel J, Liberton M, Pakrasi HB, Sherman LA. McDermott JE, et al. Among authors: oehmen cs. Mol Biosyst. 2011 Aug;7(8):2407-18. doi: 10.1039/c1mb05006k. Epub 2011 Jun 23. Mol Biosyst. 2011. PMID: 21698331

4

A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics.

Webb-Robertson BJ, Cannon WR, Oehmen CS, Shah AR, Gurumoorthi V, Lipton MS, Waters KM. Webb-Robertson BJ, et al. Among authors: oehmen cs. Bioinformatics. 2010 Jul 1;26(13):1677-83. doi: 10.1093/bioinformatics/btq251. Bioinformatics. 2010. PMID: 20568665

5

Physicochemical property distributions for accurate and rapid pairwise protein homology detection.

Webb-Robertson BJ, Ratuiste KG, Oehmen CS. Webb-Robertson BJ, et al. Among authors: oehmen cs. BMC Bioinformatics. 2010 Mar 19;11:145. doi: 10.1186/1471-2105-11-145. BMC Bioinformatics. 2010. PMID: 20302613 Free PMC article.

6

A feature vector integration approach for a generalized support vector machine pairwise homology algorithm.

Webb-Robertson BJ, Oehmen CS, Shah AR. Webb-Robertson BJ, et al. Among authors: oehmen cs. Comput Biol Chem. 2008 Dec;32(6):458-61. doi: 10.1016/j.compbiolchem.2008.07.017. Epub 2008 Jul 16. Comput Biol Chem. 2008. PMID: 18722814

7

A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics.

Webb-Robertson BJ, Cannon WR, Oehmen CS, Shah AR, Gurumoorthi V, Lipton MS, Waters KM. Webb-Robertson BJ, et al. Among authors: oehmen cs. Bioinformatics. 2008 Jul 1;24(13):1503-9. doi: 10.1093/bioinformatics/btn218. Epub 2008 May 3. Bioinformatics. 2008. Corrected and republished in: Bioinformatics. 2010 Jul 1;26(13):1677-83. doi: 10.1093/bioinformatics/btq251 PMID: 18453551 Corrected and republished.

8

SVM-HUSTLE--an iterative semi-supervised machine learning approach for pairwise protein remote homology detection.

Shah AR, Oehmen CS, Webb-Robertson BJ. Shah AR, et al. Among authors: oehmen cs. Bioinformatics. 2008 Mar 15;24(6):783-90. doi: 10.1093/bioinformatics/btn028. Epub 2008 Feb 1. Bioinformatics. 2008. PMID: 18245127

9

PQuad--a visual analysis platform for proteomic data exploration of microbial organisms.

Webb-Robertson BJ, Peterson ES, Singhal M, Klicker KR, Oehmen CS, Adkins JN, Havre SL. Webb-Robertson BJ, et al. Among authors: oehmen cs. Bioinformatics. 2007 Jul 1;23(13):1705-7. doi: 10.1093/bioinformatics/btm132. Epub 2007 May 5. Bioinformatics. 2007. PMID: 17483503

10

Integrating subcellular location for improving machine learning models of remote homology detection in eukaryotic organisms.

Shah AR, Oehmen CS, Harper J, Webb-Robertson BJ. Shah AR, et al. Among authors: oehmen cs. Comput Biol Chem. 2007 Apr;31(2):138-42. doi: 10.1016/j.compbiolchem.2007.02.012. Epub 2007 Feb 23. Comput Biol Chem. 2007. PMID: 17416337

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