Duitama J - Search Results

1

A comprehensively molecular haplotype-resolved genome of a European individual.

Suk EK, McEwen GK, Duitama J, Nowick K, Schulz S, Palczewski S, Schreiber S, Holloway DT, McLaughlin S, Peckham H, Lee C, Huebsch T, Hoehe MR. Suk EK, et al. Among authors: duitama j. Genome Res. 2011 Oct;21(10):1672-85. doi: 10.1101/gr.125047.111. Epub 2011 Aug 3. Genome Res. 2011. PMID: 21813624 Free PMC article.

2

Fosmid-based whole genome haplotyping of a HapMap trio child: evaluation of Single Individual Haplotyping techniques.

Duitama J, McEwen GK, Huebsch T, Palczewski S, Schulz S, Verstrepen K, Suk EK, Hoehe MR. Duitama J, et al. Nucleic Acids Res. 2012 Mar;40(5):2041-53. doi: 10.1093/nar/gkr1042. Epub 2011 Nov 18. Nucleic Acids Res. 2012. PMID: 22102577 Free PMC article.

3

A Fosmid Pool-Based Next Generation Sequencing Approach to Haplotype-Resolve Whole Genomes.

Suk EK, Schulz S, Mentrup B, Huebsch T, Duitama J, Hoehe MR. Suk EK, et al. Among authors: duitama j. Methods Mol Biol. 2017;1551:223-269. doi: 10.1007/978-1-4939-6750-6_13. Methods Mol Biol. 2017. PMID: 28138850

4

Structural variants in 3000 rice genomes.

Fuentes RR, Chebotarov D, Duitama J, Smith S, De la Hoz JF, Mohiyuddin M, Wing RA, McNally KL, Tatarinova T, Grigoriev A, Mauleon R, Alexandrov N. Fuentes RR, et al. Among authors: duitama j. Genome Res. 2019 May;29(5):870-880. doi: 10.1101/gr.241240.118. Epub 2019 Apr 16. Genome Res. 2019. PMID: 30992303 Free PMC article.

5

Large-scale analysis of tandem repeat variability in the human genome.

Duitama J, Zablotskaya A, Gemayel R, Jansen A, Belet S, Vermeesch JR, Verstrepen KJ, Froyen G. Duitama J, et al. Nucleic Acids Res. 2014 May;42(9):5728-41. doi: 10.1093/nar/gku212. Epub 2014 Mar 20. Nucleic Acids Res. 2014. PMID: 24682812 Free PMC article.

6

Whole genome sequencing of elite rice cultivars as a comprehensive information resource for marker assisted selection.

Duitama J, Silva A, Sanabria Y, Cruz DF, Quintero C, Ballen C, Lorieux M, Scheffler B, Farmer A, Torres E, Oard J, Tohme J. Duitama J, et al. PLoS One. 2015 Apr 29;10(4):e0124617. doi: 10.1371/journal.pone.0124617. eCollection 2015. PLoS One. 2015. PMID: 25923345 Free PMC article.

7

Resequencing of Common Bean Identifies Regions of Inter-Gene Pool Introgression and Provides Comprehensive Resources for Molecular Breeding.

Lobaton JD, Miller T, Gil J, Ariza D, de la Hoz JF, Soler A, Beebe S, Duitama J, Gepts P, Raatz B. Lobaton JD, et al. Among authors: duitama j. Plant Genome. 2018 Jul;11(2). doi: 10.3835/plantgenome2017.08.0068. Plant Genome. 2018. PMID: 30025029 Free article.

8

An integrated framework for discovery and genotyping of genomic variants from high-throughput sequencing experiments.

Duitama J, Quintero JC, Cruz DF, Quintero C, Hubmann G, Foulquié-Moreno MR, Verstrepen KJ, Thevelein JM, Tohme J. Duitama J, et al. Nucleic Acids Res. 2014 Apr;42(6):e44. doi: 10.1093/nar/gkt1381. Epub 2014 Jan 11. Nucleic Acids Res. 2014. PMID: 24413664 Free PMC article.

9

Phased Genome Assemblies.

Duitama J. Duitama J. Methods Mol Biol. 2023;2590:273-286. doi: 10.1007/978-1-0716-2819-5_16. Methods Mol Biol. 2023. PMID: 36335504

10

Towards accurate detection and genotyping of expressed variants from whole transcriptome sequencing data.

Duitama J, Srivastava PK, Măndoiu II. Duitama J, et al. BMC Genomics. 2012 Apr 12;13 Suppl 2(Suppl 2):S6. doi: 10.1186/1471-2164-13-S2-S6. BMC Genomics. 2012. PMID: 22537301 Free PMC article.

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