Wu X - Search Results

1

Transcriptome dynamics through alternative polyadenylation in developmental and environmental responses in plants revealed by deep sequencing.

Shen Y, Venu RC, Nobuta K, Wu X, Notibala V, Demirci C, Meyers BC, Wang GL, Ji G, Li QQ. Shen Y, et al. Among authors: wu x. Genome Res. 2011 Sep;21(9):1478-86. doi: 10.1101/gr.114744.110. Epub 2011 Aug 3. Genome Res. 2011. PMID: 21813626 Free PMC article.

2

Predictive modeling of plant messenger RNA polyadenylation sites.

Ji G, Zheng J, Shen Y, Wu X, Jiang R, Lin Y, Loke JC, Davis KM, Reese GJ, Li QQ. Ji G, et al. Among authors: wu x. BMC Bioinformatics. 2007 Feb 7;8:43. doi: 10.1186/1471-2105-8-43. BMC Bioinformatics. 2007. PMID: 17286857 Free PMC article.

3

Genome level analysis of rice mRNA 3'-end processing signals and alternative polyadenylation.

Shen Y, Ji G, Haas BJ, Wu X, Zheng J, Reese GJ, Li QQ. Shen Y, et al. Among authors: wu x. Nucleic Acids Res. 2008 May;36(9):3150-61. doi: 10.1093/nar/gkn158. Epub 2008 Apr 13. Nucleic Acids Res. 2008. PMID: 18411206 Free PMC article.

4

A classification-based prediction model of messenger RNA polyadenylation sites.

Ji G, Wu X, Shen Y, Huang J, Quinn Li Q. Ji G, et al. Among authors: wu x. J Theor Biol. 2010 Aug 7;265(3):287-96. doi: 10.1016/j.jtbi.2010.05.015. Epub 2010 May 26. J Theor Biol. 2010. PMID: 20546757

5

Ratio-based analysis of differential mRNA processing and expression of a polyadenylation factor mutant pcfs4 using arabidopsis tiling microarray.

Zheng J, Xing D, Wu X, Shen Y, Kroll DM, Ji G, Li QQ. Zheng J, et al. Among authors: wu x. PLoS One. 2011 Feb 25;6(2):e14719. doi: 10.1371/journal.pone.0014719. PLoS One. 2011. PMID: 21364912 Free PMC article.

6

Genome-wide landscape of polyadenylation in Arabidopsis provides evidence for extensive alternative polyadenylation.

Wu X, Liu M, Downie B, Liang C, Ji G, Li QQ, Hunt AG. Wu X, et al. Proc Natl Acad Sci U S A. 2011 Jul 26;108(30):12533-8. doi: 10.1073/pnas.1019732108. Epub 2011 Jul 11. Proc Natl Acad Sci U S A. 2011. PMID: 21746925 Free PMC article.

7

In silico prediction of mRNA poly(A) sites in Chlamydomonas reinhardtii.

Wu X, Ji G, Zeng Y. Wu X, et al. Mol Genet Genomics. 2012 Dec;287(11-12):895-907. doi: 10.1007/s00438-012-0725-5. Epub 2012 Oct 30. Mol Genet Genomics. 2012. PMID: 23108961

8

Genome-wide control of polyadenylation site choice by CPSF30 in Arabidopsis.

Thomas PE, Wu X, Liu M, Gaffney B, Ji G, Li QQ, Hunt AG. Thomas PE, et al. Among authors: wu x. Plant Cell. 2012 Nov;24(11):4376-88. doi: 10.1105/tpc.112.096107. Epub 2012 Nov 6. Plant Cell. 2012. PMID: 23136375 Free PMC article.

9

Bioinformatics analysis of alternative polyadenylation in green alga Chlamydomonas reinhardtii using transcriptome sequences from three different sequencing platforms.

Zhao Z, Wu X, Kumar PK, Dong M, Ji G, Li QQ, Liang C. Zhao Z, et al. Among authors: wu x. G3 (Bethesda). 2014 Mar 13;4(5):871-83. doi: 10.1534/g3.114.010249. G3 (Bethesda). 2014. PMID: 24626288 Free PMC article.

10

Genome-wide identification and predictive modeling of polyadenylation sites in eukaryotes.

Ji G, Guan J, Zeng Y, Li QQ, Wu X. Ji G, et al. Among authors: wu x. Brief Bioinform. 2015 Mar;16(2):304-13. doi: 10.1093/bib/bbu011. Epub 2014 Apr 1. Brief Bioinform. 2015. PMID: 24695098 Review.

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