Gennari JH - Search Results

1

Integrating systems biology models and biomedical ontologies.

Hoehndorf R, Dumontier M, Gennari JH, Wimalaratne S, de Bono B, Cook DL, Gkoutos GV. Hoehndorf R, et al. Among authors: gennari jh. BMC Syst Biol. 2011 Aug 11;5:124. doi: 10.1186/1752-0509-5-124. BMC Syst Biol. 2011. PMID: 21835028 Free PMC article.

2

Bridging biological ontologies and biosimulation: the ontology of physics for biology.

Cook DL, Mejino JL, Neal ML, Gennari JH. Cook DL, et al. Among authors: gennari jh. AMIA Annu Symp Proc. 2008 Nov 6;2008:136-40. AMIA Annu Symp Proc. 2008. PMID: 18999003 Free PMC article.

3

Composite annotations: requirements for mapping multiscale data and models to biomedical ontologies.

Cook DL, Mejino JL, Neal ML, Gennari JH. Cook DL, et al. Among authors: gennari jh. Annu Int Conf IEEE Eng Med Biol Soc. 2009;2009:2791-4. doi: 10.1109/IEMBS.2009.5333830. Annu Int Conf IEEE Eng Med Biol Soc. 2009. PMID: 19964601 Free PMC article.

4

Multiple ontologies in action: composite annotations for biosimulation models.

Gennari JH, Neal ML, Galdzicki M, Cook DL. Gennari JH, et al. J Biomed Inform. 2011 Feb;44(1):146-54. doi: 10.1016/j.jbi.2010.06.007. Epub 2010 Jun 30. J Biomed Inform. 2011. PMID: 20601121 Free PMC article.

5

Advances in semantic representation for multiscale biosimulation: a case study in merging models.

Neal ML, Gennari JH, Arts T, Cook DL. Neal ML, et al. Among authors: gennari jh. Pac Symp Biocomput. 2009:304-15. Pac Symp Biocomput. 2009. PMID: 19209710 Free PMC article.

6

Harmonizing semantic annotations for computational models in biology.

Neal ML, König M, Nickerson D, Mısırlı G, Kalbasi R, Dräger A, Atalag K, Chelliah V, Cooling MT, Cook DL, Crook S, de Alba M, Friedman SH, Garny A, Gennari JH, Gleeson P, Golebiewski M, Hucka M, Juty N, Myers C, Olivier BG, Sauro HM, Scharm M, Snoep JL, Touré V, Wipat A, Wolkenhauer O, Waltemath D. Neal ML, et al. Among authors: gennari jh. Brief Bioinform. 2019 Mar 22;20(2):540-550. doi: 10.1093/bib/bby087. Brief Bioinform. 2019. PMID: 30462164 Free PMC article. Review.

7

Chalkboard: ontology-based pathway modeling and qualitative inference of disease mechanisms.

Cook DL, Wiley JC, Gennari JH. Cook DL, et al. Among authors: gennari jh. Pac Symp Biocomput. 2007:16-27. Pac Symp Biocomput. 2007. PMID: 17992742 Free article.

8

Integration of multi-scale biosimulation models via light-weight semantics.

Gennari JH, Neal ML, Carlson BE, Cook DL. Gennari JH, et al. Pac Symp Biocomput. 2008:414-25. Pac Symp Biocomput. 2008. PMID: 18229704 Free PMC article.

9

Physical properties of biological entities: an introduction to the ontology of physics for biology.

Cook DL, Bookstein FL, Gennari JH. Cook DL, et al. Among authors: gennari jh. PLoS One. 2011;6(12):e28708. doi: 10.1371/journal.pone.0028708. Epub 2011 Dec 27. PLoS One. 2011. PMID: 22216106 Free PMC article.

10

Semantics-Based Composition of Integrated Cardiomyocyte Models Motivated by Real-World Use Cases.

Neal ML, Carlson BE, Thompson CT, James RC, Kim KG, Tran K, Crampin EJ, Cook DL, Gennari JH. Neal ML, et al. Among authors: gennari jh. PLoS One. 2015 Dec 30;10(12):e0145621. doi: 10.1371/journal.pone.0145621. eCollection 2015. PLoS One. 2015. PMID: 26716837 Free PMC article.

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