Danko CG - Search Results

1

Bayesian inference of ancient human demography from individual genome sequences.

Gronau I, Hubisz MJ, Gulko B, Danko CG, Siepel A. Gronau I, et al. Among authors: danko cg. Nat Genet. 2011 Sep 18;43(10):1031-4. doi: 10.1038/ng.937. Nat Genet. 2011. PMID: 21926973 Free PMC article.

2

A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells.

Hah N, Danko CG, Core L, Waterfall JJ, Siepel A, Lis JT, Kraus WL. Hah N, et al. Among authors: danko cg. Cell. 2011 May 13;145(4):622-34. doi: 10.1016/j.cell.2011.03.042. Epub 2011 May 5. Cell. 2011. PMID: 21549415 Free PMC article.

3

Signaling pathways differentially affect RNA polymerase II initiation, pausing, and elongation rate in cells.

Danko CG, Hah N, Luo X, Martins AL, Core L, Lis JT, Siepel A, Kraus WL. Danko CG, et al. Mol Cell. 2013 Apr 25;50(2):212-22. doi: 10.1016/j.molcel.2013.02.015. Epub 2013 Mar 21. Mol Cell. 2013. PMID: 23523369 Free PMC article.

4

Gene regulation by CcpA and catabolite repression explored by RNA-Seq in Streptococcus mutans.

Zeng L, Choi SC, Danko CG, Siepel A, Stanhope MJ, Burne RA. Zeng L, et al. Among authors: danko cg. PLoS One. 2013;8(3):e60465. doi: 10.1371/journal.pone.0060465. Epub 2013 Mar 28. PLoS One. 2013. PMID: 23555977 Free PMC article.

5

Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers.

Core LJ, Martins AL, Danko CG, Waters CT, Siepel A, Lis JT. Core LJ, et al. Among authors: danko cg. Nat Genet. 2014 Dec;46(12):1311-20. doi: 10.1038/ng.3142. Epub 2014 Nov 10. Nat Genet. 2014. PMID: 25383968 Free PMC article.

6

Identification of active transcriptional regulatory elements from GRO-seq data.

Danko CG, Hyland SL, Core LJ, Martins AL, Waters CT, Lee HW, Cheung VG, Kraus WL, Lis JT, Siepel A. Danko CG, et al. Nat Methods. 2015 May;12(5):433-8. doi: 10.1038/nmeth.3329. Epub 2015 Mar 23. Nat Methods. 2015. PMID: 25799441 Free PMC article.

7

GAGA factor maintains nucleosome-free regions and has a role in RNA polymerase II recruitment to promoters.

Fuda NJ, Guertin MJ, Sharma S, Danko CG, Martins AL, Siepel A, Lis JT. Fuda NJ, et al. Among authors: danko cg. PLoS Genet. 2015 Mar 27;11(3):e1005108. doi: 10.1371/journal.pgen.1005108. eCollection 2015 Mar. PLoS Genet. 2015. PMID: 25815464 Free PMC article.

8

Poised for development.

Choate LA, Danko CG. Choate LA, et al. Among authors: danko cg. Nat Genet. 2016 Jul 27;48(8):822-3. doi: 10.1038/ng.3628. Nat Genet. 2016. PMID: 27463395

9

Nascent RNA sequencing reveals a dynamic global transcriptional response at genes and enhancers to the natural medicinal compound celastrol.

Dukler N, Booth GT, Huang YF, Tippens N, Waters CT, Danko CG, Lis JT, Siepel A. Dukler N, et al. Among authors: danko cg. Genome Res. 2017 Nov;27(11):1816-1829. doi: 10.1101/gr.222935.117. Epub 2017 Oct 12. Genome Res. 2017. PMID: 29025894 Free PMC article.

10

Dynamic evolution of regulatory element ensembles in primate CD4⁺ T cells.

Danko CG, Choate LA, Marks BA, Rice EJ, Wang Z, Chu T, Martins AL, Dukler N, Coonrod SA, Tait Wojno ED, Lis JT, Kraus WL, Siepel A. Danko CG, et al. Nat Ecol Evol. 2018 Mar;2(3):537-548. doi: 10.1038/s41559-017-0447-5. Epub 2018 Jan 29. Nat Ecol Evol. 2018. PMID: 29379187 Free PMC article.

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