Baran R - Search Results

1

Untargeted metabolic footprinting reveals a surprising breadth of metabolite uptake and release by Synechococcus sp. PCC 7002.

Baran R, Bowen BP, Northen TR. Baran R, et al. Mol Biosyst. 2011 Dec;7(12):3200-6. doi: 10.1039/c1mb05196b. Epub 2011 Sep 21. Mol Biosyst. 2011. PMID: 21935552

2

Metabolite identification in Synechococcus sp. PCC 7002 using untargeted stable isotope assisted metabolite profiling.

Baran R, Bowen BP, Bouskill NJ, Brodie EL, Yannone SM, Northen TR. Baran R, et al. Anal Chem. 2010 Nov 1;82(21):9034-42. doi: 10.1021/ac1020112. Epub 2010 Oct 14. Anal Chem. 2010. PMID: 20945921

3

Improved genome annotation through untargeted detection of pathway-specific metabolites.

Bowen BP, Fischer CR, Baran R, Banfield JF, Northen T. Bowen BP, et al. Among authors: baran r. BMC Genomics. 2011 Jun 15;12 Suppl 1(Suppl 1):S6. doi: 10.1186/1471-2164-12-S1-S6. BMC Genomics. 2011. PMID: 21810208 Free PMC article.

4

Metabolic footprinting of mutant libraries to map metabolite utilization to genotype.

Baran R, Bowen BP, Price MN, Arkin AP, Deutschbauer AM, Northen TR. Baran R, et al. ACS Chem Biol. 2013 Jan 18;8(1):189-99. doi: 10.1021/cb300477w. Epub 2012 Oct 31. ACS Chem Biol. 2013. PMID: 23082955

5

Mass spectrometry based metabolomics and enzymatic assays for functional genomics.

Baran R, Reindl W, Northen TR. Baran R, et al. Curr Opin Microbiol. 2009 Oct;12(5):547-52. doi: 10.1016/j.mib.2009.07.004. Epub 2009 Aug 18. Curr Opin Microbiol. 2009. PMID: 19695948 Review.

6

Metabolites associated with adaptation of microorganisms to an acidophilic, metal-rich environment identified by stable-isotope-enabled metabolomics.

Mosier AC, Justice NB, Bowen BP, Baran R, Thomas BC, Northen TR, Banfield JF. Mosier AC, et al. Among authors: baran r. mBio. 2013 Mar 12;4(2):e00484-12. doi: 10.1128/mBio.00484-12. mBio. 2013. PMID: 23481603 Free PMC article.

7

Robust automated mass spectra interpretation and chemical formula calculation using mixed integer linear programming.

Baran R, Northen TR. Baran R, et al. Anal Chem. 2013 Oct 15;85(20):9777-84. doi: 10.1021/ac402180c. Epub 2013 Sep 27. Anal Chem. 2013. PMID: 24032353

8

Functional genomics of novel secondary metabolites from diverse cyanobacteria using untargeted metabolomics.

Baran R, Ivanova NN, Jose N, Garcia-Pichel F, Kyrpides NC, Gugger M, Northen TR. Baran R, et al. Mar Drugs. 2013 Sep 30;11(10):3617-31. doi: 10.3390/md11103617. Mar Drugs. 2013. PMID: 24084783 Free PMC article.

9

Exometabolite niche partitioning among sympatric soil bacteria.

Baran R, Brodie EL, Mayberry-Lewis J, Hummel E, Da Rocha UN, Chakraborty R, Bowen BP, Karaoz U, Cadillo-Quiroz H, Garcia-Pichel F, Northen TR. Baran R, et al. Nat Commun. 2015 Sep 22;6:8289. doi: 10.1038/ncomms9289. Nat Commun. 2015. PMID: 26392107 Free PMC article.

10

Extensive Turnover of Compatible Solutes in Cyanobacteria Revealed by Deuterium Oxide (D₂O) Stable Isotope Probing.

Baran R, Lau R, Bowen BP, Diamond S, Jose N, Garcia-Pichel F, Northen TR. Baran R, et al. ACS Chem Biol. 2017 Mar 17;12(3):674-681. doi: 10.1021/acschembio.6b00890. Epub 2017 Jan 18. ACS Chem Biol. 2017. PMID: 28068058 Free article.

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