Cuppen E - Search Results

1

Chromothripsis is a common mechanism driving genomic rearrangements in primary and metastatic colorectal cancer.

Kloosterman WP, Hoogstraat M, Paling O, Tavakoli-Yaraki M, Renkens I, Vermaat JS, van Roosmalen MJ, van Lieshout S, Nijman IJ, Roessingh W, van 't Slot R, van de Belt J, Guryev V, Koudijs M, Voest E, Cuppen E. Kloosterman WP, et al. Among authors: cuppen e. Genome Biol. 2011 Oct 19;12(10):R103. doi: 10.1186/gb-2011-12-10-r103. Genome Biol. 2011. PMID: 22014273 Free PMC article.

2

The microRNA-producing enzyme Dicer1 is essential for zebrafish development.

Wienholds E, Koudijs MJ, van Eeden FJ, Cuppen E, Plasterk RH. Wienholds E, et al. Among authors: cuppen e. Nat Genet. 2003 Nov;35(3):217-8. doi: 10.1038/ng1251. Epub 2003 Oct 5. Nat Genet. 2003. PMID: 14528306 Free article.

3

CONREAL: conserved regulatory elements anchored alignment algorithm for identification of transcription factor binding sites by phylogenetic footprinting.

Berezikov E, Guryev V, Plasterk RH, Cuppen E. Berezikov E, et al. Among authors: cuppen e. Genome Res. 2004 Jan;14(1):170-8. doi: 10.1101/gr.1642804. Epub 2003 Dec 12. Genome Res. 2004. PMID: 14672977 Free PMC article.

4

Single nucleotide polymorphisms associated with rat expressed sequences.

Guryev V, Berezikov E, Malik R, Plasterk RH, Cuppen E. Guryev V, et al. Among authors: cuppen e. Genome Res. 2004 Jul;14(7):1438-43. doi: 10.1101/gr.2154304. Genome Res. 2004. PMID: 15231757 Free PMC article.

5

Phylogenetic shadowing and computational identification of human microRNA genes.

Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E. Berezikov E, et al. Among authors: cuppen e. Cell. 2005 Jan 14;120(1):21-4. doi: 10.1016/j.cell.2004.12.031. Cell. 2005. PMID: 15652478 Free article.

6

CASCAD: a database of annotated candidate single nucleotide polymorphisms associated with expressed sequences.

Guryev V, Berezikov E, Cuppen E. Guryev V, et al. Among authors: cuppen e. BMC Genomics. 2005 Jan 27;6:10. doi: 10.1186/1471-2164-6-10. BMC Genomics. 2005. PMID: 15676075 Free PMC article.

7

Identification of a rat model for usher syndrome type 1B by N-ethyl-N-nitrosourea mutagenesis-driven forward genetics.

Smits BM, Peters TA, Mul JD, Croes HJ, Fransen JA, Beynon AJ, Guryev V, Plasterk RH, Cuppen E. Smits BM, et al. Among authors: cuppen e. Genetics. 2005 Aug;170(4):1887-96. doi: 10.1534/genetics.105.044222. Epub 2005 Jun 18. Genetics. 2005. PMID: 15965244 Free PMC article.

8

CONREAL web server: identification and visualization of conserved transcription factor binding sites.

Berezikov E, Guryev V, Cuppen E. Berezikov E, et al. Among authors: cuppen e. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W447-50. doi: 10.1093/nar/gki378. Nucleic Acids Res. 2005. PMID: 15980509 Free PMC article.

9

Efficient single nucleotide polymorphism discovery in laboratory rat strains using wild rat-derived SNP candidates.

Smits BM, Guryev V, Zeegers D, Wedekind D, Hedrich HJ, Cuppen E. Smits BM, et al. Among authors: cuppen e. BMC Genomics. 2005 Nov 29;6:170. doi: 10.1186/1471-2164-6-170. BMC Genomics. 2005. PMID: 16316463 Free PMC article.

10

Generation of gene knockouts and mutant models in the laboratory rat by ENU-driven target-selected mutagenesis.

Smits BM, Mudde JB, van de Belt J, Verheul M, Olivier J, Homberg J, Guryev V, Cools AR, Ellenbroek BA, Plasterk RH, Cuppen E. Smits BM, et al. Among authors: cuppen e. Pharmacogenet Genomics. 2006 Mar;16(3):159-69. doi: 10.1097/01.fpc.0000184960.82903.8f. Pharmacogenet Genomics. 2006. PMID: 16495775

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