Berger B - Search Results

1

Proteomic and functional genomic landscape of receptor tyrosine kinase and ras to extracellular signal-regulated kinase signaling.

Friedman AA, Tucker G, Singh R, Yan D, Vinayagam A, Hu Y, Binari R, Hong P, Sun X, Porto M, Pacifico S, Murali T, Finley RL Jr, Asara JM, Berger B, Perrimon N. Friedman AA, et al. Among authors: berger b. Sci Signal. 2011 Oct 25;4(196):rs10. doi: 10.1126/scisignal.2002029. Sci Signal. 2011. PMID: 22028469 Free PMC article.

2

Struct2net: integrating structure into protein-protein interaction prediction.

Singh R, Xu J, Berger B. Singh R, et al. Among authors: berger b. Pac Symp Biocomput. 2006:403-14. Pac Symp Biocomput. 2006. PMID: 17094256 Free article.

3

Predicting and annotating catalytic residues: an information theoretic approach.

Sterner B, Singh R, Berger B. Sterner B, et al. Among authors: berger b. J Comput Biol. 2007 Oct;14(8):1058-73. doi: 10.1089/cmb.2007.0042. J Comput Biol. 2007. PMID: 17887954

4

Probabilistic modeling of systematic errors in two-hybrid experiments.

Sontag D, Singh R, Berger B. Sontag D, et al. Among authors: berger b. Pac Symp Biocomput. 2007:445-57. Pac Symp Biocomput. 2007. PMID: 17990509 Free article.

5

Global alignment of multiple protein interaction networks.

Singh R, Xu J, Berger B. Singh R, et al. Among authors: berger b. Pac Symp Biocomput. 2008:303-14. Pac Symp Biocomput. 2008. PMID: 18229695 Free article.

6

Global alignment of multiple protein interaction networks with application to functional orthology detection.

Singh R, Xu J, Berger B. Singh R, et al. Among authors: berger b. Proc Natl Acad Sci U S A. 2008 Sep 2;105(35):12763-8. doi: 10.1073/pnas.0806627105. Epub 2008 Aug 25. Proc Natl Acad Sci U S A. 2008. PMID: 18725631 Free PMC article.

7

IsoRankN: spectral methods for global alignment of multiple protein networks.

Liao CS, Lu K, Baym M, Singh R, Berger B. Liao CS, et al. Among authors: berger b. Bioinformatics. 2009 Jun 15;25(12):i253-8. doi: 10.1093/bioinformatics/btp203. Bioinformatics. 2009. PMID: 19477996 Free PMC article.

8

RNAiCut: automated detection of significant genes from functional genomic screens.

Kaplow IM, Singh R, Friedman A, Bakal C, Perrimon N, Berger B. Kaplow IM, et al. Among authors: berger b. Nat Methods. 2009 Jul;6(7):476-7. doi: 10.1038/nmeth0709-476. Nat Methods. 2009. PMID: 19564846 No abstract available.

9

Inference of RhoGAP/GTPase regulation using single-cell morphological data from a combinatorial RNAi screen.

Nir O, Bakal C, Perrimon N, Berger B. Nir O, et al. Among authors: berger b. Genome Res. 2010 Mar;20(3):372-80. doi: 10.1101/gr.100248.109. Epub 2010 Feb 9. Genome Res. 2010. PMID: 20144944 Free PMC article.

10

Struct2Net: a web service to predict protein-protein interactions using a structure-based approach.

Singh R, Park D, Xu J, Hosur R, Berger B. Singh R, et al. Among authors: berger b. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W508-15. doi: 10.1093/nar/gkq481. Epub 2010 May 31. Nucleic Acids Res. 2010. PMID: 20513650 Free PMC article.

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