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A series of PDB-related databanks for everyday needs.
Touw WG, Baakman C, Black J, te Beek TA, Krieger E, Joosten RP, Vriend G. Touw WG, et al. Among authors: vriend g. Nucleic Acids Res. 2015 Jan;43(Database issue):D364-8. doi: 10.1093/nar/gku1028. Epub 2014 Oct 28. Nucleic Acids Res. 2015. PMID: 25352545 Free PMC article.
New Biological Insights from Better Structure Models.
Touw WG, Joosten RP, Vriend G. Touw WG, et al. Among authors: vriend g. J Mol Biol. 2016 Mar 27;428(6):1375-1393. doi: 10.1016/j.jmb.2016.02.002. Epub 2016 Feb 8. J Mol Biol. 2016. PMID: 26869101 Free article. Review.
A series of PDB related databases for everyday needs.
Joosten RP, te Beek TA, Krieger E, Hekkelman ML, Hooft RW, Schneider R, Sander C, Vriend G. Joosten RP, et al. Among authors: vriend g. Nucleic Acids Res. 2011 Jan;39(Database issue):D411-9. doi: 10.1093/nar/gkq1105. Epub 2010 Nov 11. Nucleic Acids Res. 2011. PMID: 21071423 Free PMC article.
A new generation of crystallographic validation tools for the protein data bank.
Read RJ, Adams PD, Arendall WB 3rd, Brunger AT, Emsley P, Joosten RP, Kleywegt GJ, Krissinel EB, Lütteke T, Otwinowski Z, Perrakis A, Richardson JS, Sheffler WH, Smith JL, Tickle IJ, Vriend G, Zwart PH. Read RJ, et al. Among authors: vriend g. Structure. 2011 Oct 12;19(10):1395-412. doi: 10.1016/j.str.2011.08.006. Structure. 2011. PMID: 22000512 Free PMC article.
Validation and correction of Zn-CysxHisy complexes.
Touw WG, van Beusekom B, Evers JM, Vriend G, Joosten RP. Touw WG, et al. Among authors: vriend g. Acta Crystallogr D Struct Biol. 2016 Oct 1;72(Pt 10):1110-1118. doi: 10.1107/S2059798316013036. Epub 2016 Sep 15. Acta Crystallogr D Struct Biol. 2016. PMID: 27710932 Free PMC article.
Facilities that make the PDB data collection more powerful.
Lange J, Baakman C, Pistorius A, Krieger E, Hooft R, Joosten RP, Vriend G. Lange J, et al. Among authors: vriend g. Protein Sci. 2020 Jan;29(1):330-344. doi: 10.1002/pro.3788. Epub 2019 Dec 2. Protein Sci. 2020. PMID: 31724231 Free PMC article.
PDB improvement starts with data deposition.
Joosten RP, Vriend G. Joosten RP, et al. Among authors: vriend g. Science. 2007 Jul 13;317(5835):195-6. doi: 10.1126/science.317.5835.195. Science. 2007. PMID: 17626865 No abstract available.
248 results