Cheng C - Search Results

1

TIP: a probabilistic method for identifying transcription factor target genes from ChIP-seq binding profiles.

Cheng C, Min R, Gerstein M. Cheng C, et al. Bioinformatics. 2011 Dec 1;27(23):3221-7. doi: 10.1093/bioinformatics/btr552. Epub 2011 Oct 29. Bioinformatics. 2011. PMID: 22039215 Free PMC article.

2

MARD: a new method to detect differential gene expression in treatment-control time courses.

Cheng C, Ma X, Yan X, Sun F, Li LM. Cheng C, et al. Bioinformatics. 2006 Nov 1;22(21):2650-7. doi: 10.1093/bioinformatics/btl451. Epub 2006 Aug 23. Bioinformatics. 2006. PMID: 16928738

3

Inference of transcription modification in long-live yeast strains from their expression profiles.

Cheng C, Fabrizio P, Ge H, Longo VD, Li LM. Cheng C, et al. BMC Genomics. 2007 Jul 6;8:219. doi: 10.1186/1471-2164-8-219. BMC Genomics. 2007. PMID: 17617911 Free PMC article.

4

Inferring activity changes of transcription factors by binding association with sorted expression profiles.

Cheng C, Yan X, Sun F, Li LM. Cheng C, et al. BMC Bioinformatics. 2007 Nov 16;8:452. doi: 10.1186/1471-2105-8-452. BMC Bioinformatics. 2007. PMID: 18021409 Free PMC article.

5

Systematic identification of cell cycle regulated transcription factors from microarray time series data.

Cheng C, Li LM. Cheng C, et al. BMC Genomics. 2008 Mar 3;9:116. doi: 10.1186/1471-2164-9-116. BMC Genomics. 2008. PMID: 18315882 Free PMC article.

6

Inferring microRNA activities by combining gene expression with microRNA target prediction.

Cheng C, Li LM. Cheng C, et al. PLoS One. 2008 Apr 23;3(4):e1989. doi: 10.1371/journal.pone.0001989. PLoS One. 2008. PMID: 18431476 Free PMC article.

7

Zebrafish miR-1 and miR-133 shape muscle gene expression and regulate sarcomeric actin organization.

Mishima Y, Abreu-Goodger C, Staton AA, Stahlhut C, Shou C, Cheng C, Gerstein M, Enright AJ, Giraldez AJ. Mishima Y, et al. Among authors: cheng c. Genes Dev. 2009 Mar 1;23(5):619-32. doi: 10.1101/gad.1760209. Epub 2009 Feb 24. Genes Dev. 2009. PMID: 19240126 Free PMC article.

8

Systematic identification of transcription factors associated with patient survival in cancers.

Cheng C, Li LM, Alves P, Gerstein M. Cheng C, et al. BMC Genomics. 2009 May 15;10:225. doi: 10.1186/1471-2164-10-225. BMC Genomics. 2009. PMID: 19442316 Free PMC article.

9

mRNA expression profiles show differential regulatory effects of microRNAs between estrogen receptor-positive and estrogen receptor-negative breast cancer.

Cheng C, Fu X, Alves P, Gerstein M. Cheng C, et al. Genome Biol. 2009;10(9):R90. doi: 10.1186/gb-2009-10-9-r90. Epub 2009 Sep 1. Genome Biol. 2009. PMID: 19723326 Free PMC article.

10

The relationship between the evolution of microRNA targets and the length of their UTRs.

Cheng C, Bhardwaj N, Gerstein M. Cheng C, et al. BMC Genomics. 2009 Sep 14;10:431. doi: 10.1186/1471-2164-10-431. BMC Genomics. 2009. PMID: 19751524 Free PMC article.

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