Manke T - Search Results

1

Transcription factor binding predictions using TRAP for the analysis of ChIP-seq data and regulatory SNPs.

Thomas-Chollier M, Hufton A, Heinig M, O'Keeffe S, Masri NE, Roider HG, Manke T, Vingron M. Thomas-Chollier M, et al. Among authors: manke t. Nat Protoc. 2011 Nov 3;6(12):1860-9. doi: 10.1038/nprot.2011.409. Nat Protoc. 2011. PMID: 22051799

2

Correlating protein-DNA and protein-protein interaction networks.

Manke T, Bringas R, Vingron M. Manke T, et al. J Mol Biol. 2003 Oct 10;333(1):75-85. doi: 10.1016/j.jmb.2003.08.004. J Mol Biol. 2003. PMID: 14516744

3

Control of replication initiation and heterochromatin formation in Saccharomyces cerevisiae by a regulator of meiotic gene expression.

Irlbacher H, Franke J, Manke T, Vingron M, Ehrenhofer-Murray AE. Irlbacher H, et al. Among authors: manke t. Genes Dev. 2005 Aug 1;19(15):1811-22. doi: 10.1101/gad.334805. Genes Dev. 2005. PMID: 16077008 Free PMC article.

4

Lethality and entropy of protein interaction networks.

Manke T, Demetrius L, Vingron M. Manke T, et al. Genome Inform. 2005;16(1):159-63. Genome Inform. 2005. PMID: 16362918

5

An entropic characterization of protein interaction networks and cellular robustness.

Manke T, Demetrius L, Vingron M. Manke T, et al. J R Soc Interface. 2006 Dec 22;3(11):843-50. doi: 10.1098/rsif.2006.0140. J R Soc Interface. 2006. PMID: 17015299 Free PMC article.

6

Predicting transcription factor affinities to DNA from a biophysical model.

Roider HG, Kanhere A, Manke T, Vingron M. Roider HG, et al. Among authors: manke t. Bioinformatics. 2007 Jan 15;23(2):134-41. doi: 10.1093/bioinformatics/btl565. Epub 2006 Nov 10. Bioinformatics. 2007. PMID: 17098775

7

Prioritization of gene regulatory interactions from large-scale modules in yeast.

Lee HJ, Manke T, Bringas R, Vingron M. Lee HJ, et al. Among authors: manke t. BMC Bioinformatics. 2008 Jan 22;9:32. doi: 10.1186/1471-2105-9-32. BMC Bioinformatics. 2008. PMID: 18211684 Free PMC article.

8

Statistical modeling of transcription factor binding affinities predicts regulatory interactions.

Manke T, Roider HG, Vingron M. Manke T, et al. PLoS Comput Biol. 2008 Mar 21;4(3):e1000039. doi: 10.1371/journal.pcbi.1000039. PLoS Comput Biol. 2008. PMID: 18369429 Free PMC article.

9

PASTAA: identifying transcription factors associated with sets of co-regulated genes.

Roider HG, Manke T, O'Keeffe S, Vingron M, Haas SA. Roider HG, et al. Among authors: manke t. Bioinformatics. 2009 Feb 15;25(4):435-42. doi: 10.1093/bioinformatics/btn627. Epub 2008 Dec 9. Bioinformatics. 2009. PMID: 19073590 Free PMC article.

10

Integrating sequence, evolution and functional genomics in regulatory genomics.

Vingron M, Brazma A, Coulson R, van Helden J, Manke T, Palin K, Sand O, Ukkonen E. Vingron M, et al. Among authors: manke t. Genome Biol. 2009;10(1):202. doi: 10.1186/gb-2009-10-1-202. Epub 2009 Jan 30. Genome Biol. 2009. PMID: 19226437 Free PMC article. Review.

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