Roider HG - Search Results

1

Transcription factor binding predictions using TRAP for the analysis of ChIP-seq data and regulatory SNPs.

Thomas-Chollier M, Hufton A, Heinig M, O'Keeffe S, Masri NE, Roider HG, Manke T, Vingron M. Thomas-Chollier M, et al. Among authors: roider hg. Nat Protoc. 2011 Nov 3;6(12):1860-9. doi: 10.1038/nprot.2011.409. Nat Protoc. 2011. PMID: 22051799

2

Predicting transcription factor affinities to DNA from a biophysical model.

Roider HG, Kanhere A, Manke T, Vingron M. Roider HG, et al. Bioinformatics. 2007 Jan 15;23(2):134-41. doi: 10.1093/bioinformatics/btl565. Epub 2006 Nov 10. Bioinformatics. 2007. PMID: 17098775

3

Statistical modeling of transcription factor binding affinities predicts regulatory interactions.

Manke T, Roider HG, Vingron M. Manke T, et al. Among authors: roider hg. PLoS Comput Biol. 2008 Mar 21;4(3):e1000039. doi: 10.1371/journal.pcbi.1000039. PLoS Comput Biol. 2008. PMID: 18369429 Free PMC article.

4

PASTAA: identifying transcription factors associated with sets of co-regulated genes.

Roider HG, Manke T, O'Keeffe S, Vingron M, Haas SA. Roider HG, et al. Bioinformatics. 2009 Feb 15;25(4):435-42. doi: 10.1093/bioinformatics/btn627. Epub 2008 Dec 9. Bioinformatics. 2009. PMID: 19073590 Free PMC article.

5

CpG-depleted promoters harbor tissue-specific transcription factor binding signals--implications for motif overrepresentation analyses.

Roider HG, Lenhard B, Kanhere A, Haas SA, Vingron M. Roider HG, et al. Nucleic Acids Res. 2009 Oct;37(19):6305-15. doi: 10.1093/nar/gkp682. Epub 2009 Sep 6. Nucleic Acids Res. 2009. PMID: 19736212 Free PMC article.

6

TransFind--predicting transcriptional regulators for gene sets.

Kiełbasa SM, Klein H, Roider HG, Vingron M, Blüthgen N. Kiełbasa SM, et al. Among authors: roider hg. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W275-80. doi: 10.1093/nar/gkq438. Epub 2010 May 28. Nucleic Acids Res. 2010. PMID: 20511592 Free PMC article.

7

A trans-acting locus regulates an anti-viral expression network and type 1 diabetes risk.

Heinig M, Petretto E, Wallace C, Bottolo L, Rotival M, Lu H, Li Y, Sarwar R, Langley SR, Bauerfeind A, Hummel O, Lee YA, Paskas S, Rintisch C, Saar K, Cooper J, Buchan R, Gray EE, Cyster JG; Cardiogenics Consortium; Erdmann J, Hengstenberg C, Maouche S, Ouwehand WH, Rice CM, Samani NJ, Schunkert H, Goodall AH, Schulz H, Roider HG, Vingron M, Blankenberg S, Münzel T, Zeller T, Szymczak S, Ziegler A, Tiret L, Smyth DJ, Pravenec M, Aitman TJ, Cambien F, Clayton D, Todd JA, Hubner N, Cook SA. Heinig M, et al. Among authors: roider hg. Nature. 2010 Sep 23;467(7314):460-4. doi: 10.1038/nature09386. Epub 2010 Sep 8. Nature. 2010. PMID: 20827270 Free PMC article.

8

Inferring epigenetic and transcriptional regulation during blood cell development with a mixture of sparse linear models.

do Rego TG, Roider HG, de Carvalho FA, Costa IG. do Rego TG, et al. Among authors: roider hg. Bioinformatics. 2012 Sep 15;28(18):2297-303. doi: 10.1093/bioinformatics/bts362. Epub 2012 Jun 23. Bioinformatics. 2012. PMID: 22730432

9

Drug2Gene: an exhaustive resource to explore effectively the drug-target relation network.

Roider HG, Pavlova N, Kirov I, Slavov S, Slavov T, Uzunov Z, Weiss B. Roider HG, et al. BMC Bioinformatics. 2014 Mar 11;15:68. doi: 10.1186/1471-2105-15-68. BMC Bioinformatics. 2014. PMID: 24618344 Free PMC article.

10

Predicting gene expression in T cell differentiation from histone modifications and transcription factor binding affinities by linear mixture models.

Costa IG, Roider HG, do Rego TG, de Carvalho Fde A. Costa IG, et al. Among authors: roider hg. BMC Bioinformatics. 2011 Feb 15;12 Suppl 1(Suppl 1):S29. doi: 10.1186/1471-2105-12-S1-S29. BMC Bioinformatics. 2011. PMID: 21342559 Free PMC article.

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