Caporaso JG - Search Results

1

The Western English Channel contains a persistent microbial seed bank.

Caporaso JG, Paszkiewicz K, Field D, Knight R, Gilbert JA. Caporaso JG, et al. ISME J. 2012 Jun;6(6):1089-93. doi: 10.1038/ismej.2011.162. Epub 2011 Nov 10. ISME J. 2012. PMID: 22071345 Free PMC article.

2

Origins of the genetic code: the escaped triplet theory.

Yarus M, Caporaso JG, Knight R. Yarus M, et al. Among authors: caporaso jg. Annu Rev Biochem. 2005;74:179-98. doi: 10.1146/annurev.biochem.74.082803.133119. Annu Rev Biochem. 2005. PMID: 15952885 Review.

3

Error minimization and coding triplet/binding site associations are independent features of the canonical genetic code.

Caporaso JG, Yarus M, Knight R. Caporaso JG, et al. J Mol Evol. 2005 Nov;61(5):597-607. doi: 10.1007/s00239-004-0314-2. Epub 2005 Oct 6. J Mol Evol. 2005. PMID: 16211428

4

QIIME allows analysis of high-throughput community sequencing data.

Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R. Caporaso JG, et al. Nat Methods. 2010 May;7(5):335-6. doi: 10.1038/nmeth.f.303. Epub 2010 Apr 11. Nat Methods. 2010. PMID: 20383131 Free PMC article. No abstract available.

5

Soil bacterial and fungal communities across a pH gradient in an arable soil.

Rousk J, Bååth E, Brookes PC, Lauber CL, Lozupone C, Caporaso JG, Knight R, Fierer N. Rousk J, et al. Among authors: caporaso jg. ISME J. 2010 Oct;4(10):1340-51. doi: 10.1038/ismej.2010.58. Epub 2010 May 6. ISME J. 2010. PMID: 20445636 Free article.

6

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample.

Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Lozupone CA, Turnbaugh PJ, Fierer N, Knight R. Caporaso JG, et al. Proc Natl Acad Sci U S A. 2011 Mar 15;108 Suppl 1(Suppl 1):4516-22. doi: 10.1073/pnas.1000080107. Epub 2010 Jun 3. Proc Natl Acad Sci U S A. 2011. PMID: 20534432 Free PMC article.

7

Soil bacterial diversity in the Arctic is not fundamentally different from that found in other biomes.

Chu H, Fierer N, Lauber CL, Caporaso JG, Knight R, Grogan P. Chu H, et al. Among authors: caporaso jg. Environ Microbiol. 2010 Nov;12(11):2998-3006. doi: 10.1111/j.1462-2920.2010.02277.x. Environ Microbiol. 2010. PMID: 20561020

8

Examining the global distribution of dominant archaeal populations in soil.

Bates ST, Berg-Lyons D, Caporaso JG, Walters WA, Knight R, Fierer N. Bates ST, et al. Among authors: caporaso jg. ISME J. 2011 May;5(5):908-17. doi: 10.1038/ismej.2010.171. Epub 2010 Nov 18. ISME J. 2011. PMID: 21085198 Free PMC article.

9

Bacterial communities associated with the lichen symbiosis.

Bates ST, Cropsey GW, Caporaso JG, Knight R, Fierer N. Bates ST, et al. Among authors: caporaso jg. Appl Environ Microbiol. 2011 Feb;77(4):1309-14. doi: 10.1128/AEM.02257-10. Epub 2010 Dec 17. Appl Environ Microbiol. 2011. PMID: 21169444 Free PMC article.

10

PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers.

Walters WA, Caporaso JG, Lauber CL, Berg-Lyons D, Fierer N, Knight R. Walters WA, et al. Among authors: caporaso jg. Bioinformatics. 2011 Apr 15;27(8):1159-61. doi: 10.1093/bioinformatics/btr087. Epub 2011 Feb 23. Bioinformatics. 2011. PMID: 21349862 Free PMC article.

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