Sun Z - Search Results

1

TREAT: a bioinformatics tool for variant annotations and visualizations in targeted and exome sequencing data.

Asmann YW, Middha S, Hossain A, Baheti S, Li Y, Chai HS, Sun Z, Duffy PH, Hadad AA, Nair A, Liu X, Zhang Y, Klee EW, Kalari KR, Kocher JP. Asmann YW, et al. Among authors: sun z. Bioinformatics. 2012 Jan 15;28(2):277-8. doi: 10.1093/bioinformatics/btr612. Epub 2011 Nov 15. Bioinformatics. 2012. PMID: 22088845 Free PMC article.

2

Impact of sample acquisition and linear amplification on gene expression profiling of lung adenocarcinoma: laser capture micro-dissection cell-sampling versus bulk tissue-sampling.

Klee EW, Erdogan S, Tillmans L, Kosari F, Sun Z, Wigle DA, Yang P, Aubry MC, Vasmatzis G. Klee EW, et al. Among authors: sun z. BMC Med Genomics. 2009 Mar 9;2:13. doi: 10.1186/1755-8794-2-13. BMC Med Genomics. 2009. PMID: 19272143 Free PMC article.

3

Changes in cardiac gene expression after pig-to-primate orthotopic xenotransplantation.

Byrne GW, Du Z, Sun Z, Asmann YW, McGregor CG. Byrne GW, et al. Among authors: sun z. Xenotransplantation. 2011 Jan-Feb;18(1):14-27. doi: 10.1111/j.1399-3089.2010.00620.x. Xenotransplantation. 2011. PMID: 21342284 Free PMC article.

4

Integrated analysis of gene expression, CpG island methylation, and gene copy number in breast cancer cells by deep sequencing.

Sun Z, Asmann YW, Kalari KR, Bot B, Eckel-Passow JE, Baker TR, Carr JM, Khrebtukova I, Luo S, Zhang L, Schroth GP, Perez EA, Thompson EA. Sun Z, et al. PLoS One. 2011 Feb 25;6(2):e17490. doi: 10.1371/journal.pone.0017490. PLoS One. 2011. PMID: 21364760 Free PMC article.

5

A novel bioinformatics pipeline for identification and characterization of fusion transcripts in breast cancer and normal cell lines.

Asmann YW, Hossain A, Necela BM, Middha S, Kalari KR, Sun Z, Chai HS, Williamson DW, Radisky D, Schroth GP, Kocher JP, Perez EA, Thompson EA. Asmann YW, et al. Among authors: sun z. Nucleic Acids Res. 2011 Aug;39(15):e100. doi: 10.1093/nar/gkr362. Epub 2011 May 27. Nucleic Acids Res. 2011. PMID: 21622959 Free PMC article.

6

Batch effect correction for genome-wide methylation data with Illumina Infinium platform.

Sun Z, Chai HS, Wu Y, White WM, Donkena KV, Klein CJ, Garovic VD, Therneau TM, Kocher JP. Sun Z, et al. BMC Med Genomics. 2011 Dec 16;4:84. doi: 10.1186/1755-8794-4-84. BMC Med Genomics. 2011. PMID: 22171553 Free PMC article.

7

Gemcitabine metabolic pathway genetic polymorphisms and response in patients with non-small cell lung cancer.

Li L, Schaid DJ, Fridley BL, Kalari KR, Jenkins GD, Abo RP, Batzler A, Moon I, Pelleymounter L, Eckloff BW, Wieben ED, Sun Z, Yang P, Wang L. Li L, et al. Among authors: sun z. Pharmacogenet Genomics. 2012 Feb;22(2):105-16. doi: 10.1097/FPC.0b013e32834dd7e2. Pharmacogenet Genomics. 2012. PMID: 22173087 Free PMC article.

8

Concordance of changes in metabolic pathways based on plasma metabolomics and skeletal muscle transcriptomics in type 1 diabetes.

Dutta T, Chai HS, Ward LE, Ghosh A, Persson XM, Ford GC, Kudva YC, Sun Z, Asmann YW, Kocher JP, Nair KS. Dutta T, et al. Among authors: sun z. Diabetes. 2012 May;61(5):1004-16. doi: 10.2337/db11-0874. Epub 2012 Mar 13. Diabetes. 2012. PMID: 22415876 Free PMC article.

9

Global methylation profiling for risk prediction of prostate cancer.

Mahapatra S, Klee EW, Young CY, Sun Z, Jimenez RE, Klee GG, Tindall DJ, Donkena KV. Mahapatra S, et al. Among authors: sun z. Clin Cancer Res. 2012 May 15;18(10):2882-95. doi: 10.1158/1078-0432.CCR-11-2090. Clin Cancer Res. 2012. PMID: 22589488

10

Deep Sequence Analysis of Non-Small Cell Lung Cancer: Integrated Analysis of Gene Expression, Alternative Splicing, and Single Nucleotide Variations in Lung Adenocarcinomas with and without Oncogenic KRAS Mutations.

Kalari KR, Rossell D, Necela BM, Asmann YW, Nair A, Baheti S, Kachergus JM, Younkin CS, Baker T, Carr JM, Tang X, Walsh MP, Chai HS, Sun Z, Hart SN, Leontovich AA, Hossain A, Kocher JP, Perez EA, Reisman DN, Fields AP, Thompson EA. Kalari KR, et al. Among authors: sun z. Front Oncol. 2012 Feb 10;2:12. doi: 10.3389/fonc.2012.00012. eCollection 2012. Front Oncol. 2012. PMID: 22655260 Free PMC article.

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