Zhang Y - Search Results

1

TREAT: a bioinformatics tool for variant annotations and visualizations in targeted and exome sequencing data.

Asmann YW, Middha S, Hossain A, Baheti S, Li Y, Chai HS, Sun Z, Duffy PH, Hadad AA, Nair A, Liu X, Zhang Y, Klee EW, Kalari KR, Kocher JP. Asmann YW, et al. Among authors: zhang y. Bioinformatics. 2012 Jan 15;28(2):277-8. doi: 10.1093/bioinformatics/btr612. Epub 2011 Nov 15. Bioinformatics. 2012. PMID: 22088845 Free PMC article.

2

SAAP-RRBS: streamlined analysis and annotation pipeline for reduced representation bisulfite sequencing.

Sun Z, Baheti S, Middha S, Kanwar R, Zhang Y, Li X, Beutler AS, Klee E, Asmann YW, Thompson EA, Kocher JP. Sun Z, et al. Among authors: zhang y. Bioinformatics. 2012 Aug 15;28(16):2180-1. doi: 10.1093/bioinformatics/bts337. Epub 2012 Jun 10. Bioinformatics. 2012. PMID: 22689387 Free PMC article.

3

Impact of library preparation on downstream analysis and interpretation of RNA-Seq data: comparison between Illumina PolyA and NuGEN Ovation protocol.

Sun Z, Asmann YW, Nair A, Zhang Y, Wang L, Kalari KR, Bhagwate AV, Baker TR, Carr JM, Kocher JP, Perez EA, Thompson EA. Sun Z, et al. Among authors: zhang y. PLoS One. 2013 Aug 19;8(8):e71745. doi: 10.1371/journal.pone.0071745. eCollection 2013. PLoS One. 2013. PMID: 23977132 Free PMC article.

4

MACE: model based analysis of ChIP-exo.

Wang L, Chen J, Wang C, Uusküla-Reimand L, Chen K, Medina-Rivera A, Young EJ, Zimmermann MT, Yan H, Sun Z, Zhang Y, Wu ST, Huang H, Wilson MD, Kocher JP, Li W. Wang L, et al. Among authors: zhang y. Nucleic Acids Res. 2014 Nov 10;42(20):e156. doi: 10.1093/nar/gku846. Epub 2014 Sep 23. Nucleic Acids Res. 2014. PMID: 25249628 Free PMC article.

5

Gene Expression Signatures Characterized by Longitudinal Stability and Interindividual Variability Delineate Baseline Phenotypic Groups with Distinct Responses to Immune Stimulation.

Scheid AD, Van Keulen VP, Felts SJ, Neier SC, Middha S, Nair AA, Techentin RW, Gilbert BK, Jen J, Neuhauser C, Zhang Y, Pease LR. Scheid AD, et al. Among authors: zhang y. J Immunol. 2018 Mar 1;200(5):1917-1928. doi: 10.4049/jimmunol.1701099. Epub 2018 Jan 19. J Immunol. 2018. PMID: 29352003 Free PMC article.

6

Network-based analysis reveals distinct association patterns in a semantic MEDLINE-based drug-disease-gene network.

Zhang Y, Tao C, Jiang G, Nair AA, Su J, Chute CG, Liu H. Zhang Y, et al. J Biomed Semantics. 2014 Aug 6;5:33. doi: 10.1186/2041-1480-5-33. eCollection 2014. J Biomed Semantics. 2014. PMID: 25170419 Free PMC article.

7

Research resource: whole transcriptome RNA sequencing detects multiple 1α,25-dihydroxyvitamin D(3)-sensitive metabolic pathways in developing zebrafish.

Craig TA, Zhang Y, McNulty MS, Middha S, Ketha H, Singh RJ, Magis AT, Funk C, Price ND, Ekker SC, Kumar R. Craig TA, et al. Among authors: zhang y. Mol Endocrinol. 2012 Sep;26(9):1630-42. doi: 10.1210/me.2012-1113. Epub 2012 Jun 25. Mol Endocrinol. 2012. PMID: 22734042 Free PMC article.

8

Gene expression patterns in CD4+ peripheral blood cells in healthy subjects and stage IV melanoma patients.

Felts SJ, Van Keulen VP, Scheid AD, Allen KS, Bradshaw RK, Jen J, Peikert T, Middha S, Zhang Y, Block MS, Markovic SN, Pease LR. Felts SJ, et al. Among authors: zhang y. Cancer Immunol Immunother. 2015 Nov;64(11):1437-47. doi: 10.1007/s00262-015-1745-x. Epub 2015 Aug 6. Cancer Immunol Immunother. 2015. PMID: 26245876 Free PMC article.

9

Retinoblastoma Binding Protein 4 Modulates Temozolomide Sensitivity in Glioblastoma by Regulating DNA Repair Proteins.

Kitange GJ, Mladek AC, Schroeder MA, Pokorny JC, Carlson BL, Zhang Y, Nair AA, Lee JH, Yan H, Decker PA, Zhang Z, Sarkaria JN. Kitange GJ, et al. Among authors: zhang z, zhang y. Cell Rep. 2016 Mar 22;14(11):2587-98. doi: 10.1016/j.celrep.2016.02.045. Epub 2016 Mar 10. Cell Rep. 2016. PMID: 26972001 Free PMC article.

10

Calculating sample size estimates for RNA sequencing data.

Hart SN, Therneau TM, Zhang Y, Poland GA, Kocher JP. Hart SN, et al. Among authors: zhang y. J Comput Biol. 2013 Dec;20(12):970-8. doi: 10.1089/cmb.2012.0283. Epub 2013 Aug 20. J Comput Biol. 2013. PMID: 23961961 Free PMC article.

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