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A three-gene model to robustly identify breast cancer molecular subtypes.
Haibe-Kains B, Desmedt C, Loi S, Culhane AC, Bontempi G, Quackenbush J, Sotiriou C. Haibe-Kains B, et al. Among authors: bontempi g. J Natl Cancer Inst. 2012 Feb 22;104(4):311-25. doi: 10.1093/jnci/djr545. Epub 2012 Jan 18. J Natl Cancer Inst. 2012. PMID: 22262870 Free PMC article.
Using shRNA experiments to validate gene regulatory networks.
Olsen C, Fleming K, Prendergast N, Rubio R, Emmert-Streib F, Bontempi G, Quackenbush J, Haibe-Kains B. Olsen C, et al. Among authors: bontempi g. Genom Data. 2015 Apr 1;4:123-6. doi: 10.1016/j.gdata.2015.03.011. eCollection 2015 Jun. Genom Data. 2015. PMID: 26484195 Free PMC article.
Comparison and validation of genomic predictors for anticancer drug sensitivity.
Papillon-Cavanagh S, De Jay N, Hachem N, Olsen C, Bontempi G, Aerts HJ, Quackenbush J, Haibe-Kains B. Papillon-Cavanagh S, et al. Among authors: bontempi g. J Am Med Inform Assoc. 2013 Jul-Aug;20(4):597-602. doi: 10.1136/amiajnl-2012-001442. Epub 2013 Jan 26. J Am Med Inform Assoc. 2013. PMID: 23355484 Free PMC article.
mRMRe: an R package for parallelized mRMR ensemble feature selection.
De Jay N, Papillon-Cavanagh S, Olsen C, El-Hachem N, Bontempi G, Haibe-Kains B. De Jay N, et al. Among authors: bontempi g. Bioinformatics. 2013 Sep 15;29(18):2365-8. doi: 10.1093/bioinformatics/btt383. Epub 2013 Jul 3. Bioinformatics. 2013. PMID: 23825369
TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data.
Colaprico A, Silva TC, Olsen C, Garofano L, Cava C, Garolini D, Sabedot TS, Malta TM, Pagnotta SM, Castiglioni I, Ceccarelli M, Bontempi G, Noushmehr H. Colaprico A, et al. Among authors: bontempi g. Nucleic Acids Res. 2016 May 5;44(8):e71. doi: 10.1093/nar/gkv1507. Epub 2015 Dec 23. Nucleic Acids Res. 2016. PMID: 26704973 Free PMC article.
88 results