Kotera M - Search Results

1

The KEGG databases and tools facilitating omics analysis: latest developments involving human diseases and pharmaceuticals.

Kotera M, Hirakawa M, Tokimatsu T, Goto S, Kanehisa M. Kotera M, et al. Methods Mol Biol. 2012;802:19-39. doi: 10.1007/978-1-61779-400-1_2. Methods Mol Biol. 2012. PMID: 22130871 Free article.

2

E-zyme: predicting potential EC numbers from the chemical transformation pattern of substrate-product pairs.

Yamanishi Y, Hattori M, Kotera M, Goto S, Kanehisa M. Yamanishi Y, et al. Among authors: kotera m. Bioinformatics. 2009 Jun 15;25(12):i179-86. doi: 10.1093/bioinformatics/btp223. Bioinformatics. 2009. PMID: 19477985 Free PMC article.

3

Characterization and classification of adverse drug interactions.

Takarabe M, Shigemizu D, Kotera M, Goto S, Kanehisa M. Takarabe M, et al. Among authors: kotera m. Genome Inform. 2010 Jan;22:167-75. Genome Inform. 2010. PMID: 20238427

4

PathPred: an enzyme-catalyzed metabolic pathway prediction server.

Moriya Y, Shigemizu D, Hattori M, Tokimatsu T, Kotera M, Goto S, Kanehisa M. Moriya Y, et al. Among authors: kotera m. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W138-43. doi: 10.1093/nar/gkq318. Epub 2010 Apr 30. Nucleic Acids Res. 2010. PMID: 20435670 Free PMC article.

5

Network-based analysis and characterization of adverse drug-drug interactions.

Takarabe M, Shigemizu D, Kotera M, Goto S, Kanehisa M. Takarabe M, et al. Among authors: kotera m. J Chem Inf Model. 2011 Nov 28;51(11):2977-85. doi: 10.1021/ci200367w. Epub 2011 Oct 11. J Chem Inf Model. 2011. PMID: 21942936

6

Comprehensive genomic analysis of sulfur-relay pathway genes.

Kotera M, Bayashi T, Hattori M, Tokimatsu T, Goto S, Mihara H, Kanehisa M. Kotera M, et al. Genome Inform. 2010;24:104-15. Genome Inform. 2010. PMID: 22081593 Free article.

7

Genome-wide analysis of plant UGT family based on sequence and substrate information.

Nishimura Y, Tokimatsu T, Kotera M, Goto S, Kanehisa M. Nishimura Y, et al. Among authors: kotera m. Genome Inform. 2010;24:127-38. Genome Inform. 2010. PMID: 22081595 Free article.

8

MUCHA: multiple chemical alignment algorithm to identify building block substructures of orphan secondary metabolites.

Kotera M, Tokimatsu T, Kanehisa M, Goto S. Kotera M, et al. BMC Bioinformatics. 2011 Dec 14;12 Suppl 14(Suppl 14):S1. doi: 10.1186/1471-2105-12-S14-S1. BMC Bioinformatics. 2011. PMID: 22373367 Free PMC article.

9

GENIES: gene network inference engine based on supervised analysis.

Kotera M, Yamanishi Y, Moriya Y, Kanehisa M, Goto S. Kotera M, et al. Nucleic Acids Res. 2012 Jul;40(Web Server issue):W162-7. doi: 10.1093/nar/gks459. Epub 2012 May 18. Nucleic Acids Res. 2012. PMID: 22610856 Free PMC article.

10

Modular architecture of metabolic pathways revealed by conserved sequences of reactions.

Muto A, Kotera M, Tokimatsu T, Nakagawa Z, Goto S, Kanehisa M. Muto A, et al. Among authors: kotera m. J Chem Inf Model. 2013 Mar 25;53(3):613-22. doi: 10.1021/ci3005379. Epub 2013 Feb 19. J Chem Inf Model. 2013. PMID: 23384306 Free PMC article.

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