Tokimatsu T - Search Results

1

The KEGG databases and tools facilitating omics analysis: latest developments involving human diseases and pharmaceuticals.

Kotera M, Hirakawa M, Tokimatsu T, Goto S, Kanehisa M. Kotera M, et al. Among authors: tokimatsu t. Methods Mol Biol. 2012;802:19-39. doi: 10.1007/978-1-61779-400-1_2. Methods Mol Biol. 2012. PMID: 22130871 Free article.

2

KEGG for linking genomes to life and the environment.

Kanehisa M, Araki M, Goto S, Hattori M, Hirakawa M, Itoh M, Katayama T, Kawashima S, Okuda S, Tokimatsu T, Yamanishi Y. Kanehisa M, et al. Among authors: tokimatsu t. Nucleic Acids Res. 2008 Jan;36(Database issue):D480-4. doi: 10.1093/nar/gkm882. Epub 2007 Dec 12. Nucleic Acids Res. 2008. PMID: 18077471 Free PMC article.

3

KaPPA-View4: a metabolic pathway database for representation and analysis of correlation networks of gene co-expression and metabolite co-accumulation and omics data.

Sakurai N, Ara T, Ogata Y, Sano R, Ohno T, Sugiyama K, Hiruta A, Yamazaki K, Yano K, Aoki K, Aharoni A, Hamada K, Yokoyama K, Kawamura S, Otsuka H, Tokimatsu T, Kanehisa M, Suzuki H, Saito K, Shibata D. Sakurai N, et al. Among authors: tokimatsu t. Nucleic Acids Res. 2011 Jan;39(Database issue):D677-84. doi: 10.1093/nar/gkq989. Epub 2010 Nov 19. Nucleic Acids Res. 2011. PMID: 21097783 Free PMC article.

4

Comprehensive genomic analysis of sulfur-relay pathway genes.

Kotera M, Bayashi T, Hattori M, Tokimatsu T, Goto S, Mihara H, Kanehisa M. Kotera M, et al. Among authors: tokimatsu t. Genome Inform. 2010;24:104-15. Genome Inform. 2010. PMID: 22081593 Free article.

5

Genome-wide analysis of plant UGT family based on sequence and substrate information.

Nishimura Y, Tokimatsu T, Kotera M, Goto S, Kanehisa M. Nishimura Y, et al. Among authors: tokimatsu t. Genome Inform. 2010;24:127-38. Genome Inform. 2010. PMID: 22081595 Free article.

6

MUCHA: multiple chemical alignment algorithm to identify building block substructures of orphan secondary metabolites.

Kotera M, Tokimatsu T, Kanehisa M, Goto S. Kotera M, et al. Among authors: tokimatsu t. BMC Bioinformatics. 2011 Dec 14;12 Suppl 14(Suppl 14):S1. doi: 10.1186/1471-2105-12-S14-S1. BMC Bioinformatics. 2011. PMID: 22373367 Free PMC article.

7

Modular architecture of metabolic pathways revealed by conserved sequences of reactions.

Muto A, Kotera M, Tokimatsu T, Nakagawa Z, Goto S, Kanehisa M. Muto A, et al. Among authors: tokimatsu t. J Chem Inf Model. 2013 Mar 25;53(3):613-22. doi: 10.1021/ci3005379. Epub 2013 Feb 19. J Chem Inf Model. 2013. PMID: 23384306 Free PMC article.

8

Supervised de novo reconstruction of metabolic pathways from metabolome-scale compound sets.

Kotera M, Tabei Y, Yamanishi Y, Tokimatsu T, Goto S. Kotera M, et al. Among authors: tokimatsu t. Bioinformatics. 2013 Jul 1;29(13):i135-44. doi: 10.1093/bioinformatics/btt244. Bioinformatics. 2013. PMID: 23812977 Free PMC article.

9

Metabolome-scale prediction of intermediate compounds in multistep metabolic pathways with a recursive supervised approach.

Kotera M, Tabei Y, Yamanishi Y, Muto A, Moriya Y, Tokimatsu T, Goto S. Kotera M, et al. Among authors: tokimatsu t. Bioinformatics. 2014 Jun 15;30(12):i165-74. doi: 10.1093/bioinformatics/btu265. Bioinformatics. 2014. PMID: 24931980 Free PMC article.

10

Identification of Enzyme Genes Using Chemical Structure Alignments of Substrate-Product Pairs.

Moriya Y, Yamada T, Okuda S, Nakagawa Z, Kotera M, Tokimatsu T, Kanehisa M, Goto S. Moriya Y, et al. Among authors: tokimatsu t. J Chem Inf Model. 2016 Mar 28;56(3):510-6. doi: 10.1021/acs.jcim.5b00216. Epub 2016 Feb 17. J Chem Inf Model. 2016. PMID: 26822930

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