Chen R - Search Results

1

NONCODE v3.0: integrative annotation of long noncoding RNAs.

Bu D, Yu K, Sun S, Xie C, Skogerbø G, Miao R, Xiao H, Liao Q, Luo H, Zhao G, Zhao H, Liu Z, Liu C, Chen R, Zhao Y. Bu D, et al. Among authors: chen r. Nucleic Acids Res. 2012 Jan;40(Database issue):D210-5. doi: 10.1093/nar/gkr1175. Epub 2011 Dec 1. Nucleic Acids Res. 2012. PMID: 22135294 Free PMC article.

2

Topological structure analysis of the protein-protein interaction network in budding yeast.

Bu D, Zhao Y, Cai L, Xue H, Zhu X, Lu H, Zhang J, Sun S, Ling L, Zhang N, Li G, Chen R. Bu D, et al. Among authors: chen r. Nucleic Acids Res. 2003 May 1;31(9):2443-50. doi: 10.1093/nar/gkg340. Nucleic Acids Res. 2003. PMID: 12711690 Free PMC article.

3

The interactome as a tree--an attempt to visualize the protein-protein interaction network in yeast.

Lu H, Zhu X, Liu H, Skogerbø G, Zhang J, Zhang Y, Cai L, Zhao Y, Sun S, Xu J, Bu D, Chen R. Lu H, et al. Among authors: chen r. Nucleic Acids Res. 2004 Sep 8;32(16):4804-11. doi: 10.1093/nar/gkh814. Print 2004. Nucleic Acids Res. 2004. PMID: 15356297 Free PMC article.

4

NONCODE: an integrated knowledge database of non-coding RNAs.

Liu C, Bai B, Skogerbø G, Cai L, Deng W, Zhang Y, Bu D, Zhao Y, Chen R. Liu C, et al. Among authors: chen r. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D112-5. doi: 10.1093/nar/gki041. Nucleic Acids Res. 2005. PMID: 15608158 Free PMC article.

5

Genome-wide analysis of mammalian DNA segment fusion/fission.

Zhang Z, Sun H, Zhang Y, Zhao Y, Shi B, Sun S, Lu H, Bu D, Ling L, Chen R. Zhang Z, et al. Among authors: chen r. J Theor Biol. 2006 May 21;240(2):200-8. doi: 10.1016/j.jtbi.2005.09.016. Epub 2005 Nov 14. J Theor Biol. 2006. PMID: 16289610

6

Organization of the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expression.

Deng W, Zhu X, Skogerbø G, Zhao Y, Fu Z, Wang Y, He H, Cai L, Sun H, Liu C, Li B, Bai B, Wang J, Jia D, Sun S, He H, Cui Y, Wang Y, Bu D, Chen R. Deng W, et al. Among authors: chen r. Genome Res. 2006 Jan;16(1):20-9. doi: 10.1101/gr.4139206. Epub 2005 Dec 12. Genome Res. 2006. PMID: 16344563 Free PMC article.

7

NPInter: the noncoding RNAs and protein related biomacromolecules interaction database.

Wu T, Wang J, Liu C, Zhang Y, Shi B, Zhu X, Zhang Z, Skogerbø G, Chen L, Lu H, Zhao Y, Chen R. Wu T, et al. Among authors: chen l, chen r. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D150-2. doi: 10.1093/nar/gkj025. Nucleic Acids Res. 2006. PMID: 16381834 Free PMC article.

8

Prediction of structured non-coding RNAs in the genomes of the nematodes Caenorhabditis elegans and Caenorhabditis briggsae.

Missal K, Zhu X, Rose D, Deng W, Skogerbø G, Chen R, Stadler PF. Missal K, et al. Among authors: chen r. J Exp Zool B Mol Dev Evol. 2006 Jul 15;306(4):379-92. doi: 10.1002/jez.b.21086. J Exp Zool B Mol Dev Evol. 2006. PMID: 16425273

9

Faster and more accurate global protein function assignment from protein interaction networks using the MFGO algorithm.

Sun S, Zhao Y, Jiao Y, Yin Y, Cai L, Zhang Y, Lu H, Chen R, Bu D. Sun S, et al. Among authors: chen r. FEBS Lett. 2006 Mar 20;580(7):1891-6. doi: 10.1016/j.febslet.2006.02.053. Epub 2006 Feb 28. FEBS Lett. 2006. PMID: 16516894 Free article.

10

Identifying Hfq-binding small RNA targets in Escherichia coli.

Zhang Y, Sun S, Wu T, Wang J, Liu C, Chen L, Zhu X, Zhao Y, Zhang Z, Shi B, Lu H, Chen R. Zhang Y, et al. Among authors: chen l, chen r. Biochem Biophys Res Commun. 2006 May 12;343(3):950-5. doi: 10.1016/j.bbrc.2006.02.196. Epub 2006 Mar 20. Biochem Biophys Res Commun. 2006. PMID: 16574072

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