Xie X - Search Results

1

MotifMap: integrative genome-wide maps of regulatory motif sites for model species.

Daily K, Patel VR, Rigor P, Xie X, Baldi P. Daily K, et al. Among authors: xie x. BMC Bioinformatics. 2011 Dec 30;12:495. doi: 10.1186/1471-2105-12-495. BMC Bioinformatics. 2011. PMID: 22208852 Free PMC article.

2

Discovering regulatory motifs in the Plasmodium genome using comparative genomics.

Wu J, Sieglaff DH, Gervin J, Xie XS. Wu J, et al. Bioinformatics. 2008 Sep 1;24(17):1843-9. doi: 10.1093/bioinformatics/btn348. Epub 2008 Jul 8. Bioinformatics. 2008. PMID: 18611947 Free PMC article.

3

Human genomes as email attachments.

Christley S, Lu Y, Li C, Xie X. Christley S, et al. Among authors: xie x. Bioinformatics. 2009 Jan 15;25(2):274-5. doi: 10.1093/bioinformatics/btn582. Epub 2008 Nov 7. Bioinformatics. 2009. PMID: 18996942

4

MotifMap: a human genome-wide map of candidate regulatory motif sites.

Xie X, Rigor P, Baldi P. Xie X, et al. Bioinformatics. 2009 Jan 15;25(2):167-74. doi: 10.1093/bioinformatics/btn605. Epub 2008 Nov 18. Bioinformatics. 2009. PMID: 19017655 Free PMC article.

5

Comparative genomics allows the discovery of cis-regulatory elements in mosquitoes.

Sieglaff DH, Dunn WA, Xie XS, Megy K, Marinotti O, James AA. Sieglaff DH, et al. Proc Natl Acad Sci U S A. 2009 Mar 3;106(9):3053-8. doi: 10.1073/pnas.0813264106. Epub 2009 Feb 11. Proc Natl Acad Sci U S A. 2009. PMID: 19211788 Free PMC article.

6

Identifying gene regulatory networks in schizophrenia.

Potkin SG, Macciardi F, Guffanti G, Fallon JH, Wang Q, Turner JA, Lakatos A, Miles MF, Lander A, Vawter MP, Xie X. Potkin SG, et al. Among authors: xie x. Neuroimage. 2010 Nov 15;53(3):839-47. doi: 10.1016/j.neuroimage.2010.06.036. Epub 2010 Jun 22. Neuroimage. 2010. PMID: 20600988 Free PMC article. Review.

7

Data structures and compression algorithms for high-throughput sequencing technologies.

Daily K, Rigor P, Christley S, Xie X, Baldi P. Daily K, et al. Among authors: xie x. BMC Bioinformatics. 2010 Oct 14;11:514. doi: 10.1186/1471-2105-11-514. BMC Bioinformatics. 2010. PMID: 20946637 Free PMC article.

8

SNP-based pathway enrichment analysis for genome-wide association studies.

Weng L, Macciardi F, Subramanian A, Guffanti G, Potkin SG, Yu Z, Xie X. Weng L, et al. Among authors: xie x. BMC Bioinformatics. 2011 Apr 15;12:99. doi: 10.1186/1471-2105-12-99. BMC Bioinformatics. 2011. PMID: 21496265 Free PMC article.

9

Genome-wide analysis of hepatic LRH-1 reveals a promoter binding preference and suggests a role in regulating genes of lipid metabolism in concert with FXR.

Chong HK, Biesinger J, Seo YK, Xie X, Osborne TF. Chong HK, et al. Among authors: xie x. BMC Genomics. 2012 Feb 1;13:51. doi: 10.1186/1471-2164-13-51. BMC Genomics. 2012. PMID: 22296850 Free PMC article.

10

Discovering and mapping chromatin states using a tree hidden Markov model.

Biesinger J, Wang Y, Xie X. Biesinger J, et al. Among authors: xie x. BMC Bioinformatics. 2013;14 Suppl 5(Suppl 5):S4. doi: 10.1186/1471-2105-14-S5-S4. Epub 2013 Apr 10. BMC Bioinformatics. 2013. PMID: 23734743 Free PMC article.

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