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Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics.
Bonnal RJ, Aerts J, Githinji G, Goto N, MacLean D, Miller CA, Mishima H, Pagani M, Ramirez-Gonzalez R, Smant G, Strozzi F, Syme R, Vos R, Wennblom TJ, Woodcroft BJ, Katayama T, Prins P. Bonnal RJ, et al. Among authors: pagani m. Bioinformatics. 2012 Apr 1;28(7):1035-7. doi: 10.1093/bioinformatics/bts080. Epub 2012 Feb 12. Bioinformatics. 2012. PMID: 22332238 Free PMC article.
Distinct microRNA signatures in human lymphocyte subsets and enforcement of the naive state in CD4+ T cells by the microRNA miR-125b.
Rossi RL, Rossetti G, Wenandy L, Curti S, Ripamonti A, Bonnal RJ, Birolo RS, Moro M, Crosti MC, Gruarin P, Maglie S, Marabita F, Mascheroni D, Parente V, Comelli M, Trabucchi E, De Francesco R, Geginat J, Abrignani S, Pagani M. Rossi RL, et al. Among authors: pagani m. Nat Immunol. 2011 Jun 26;12(8):796-803. doi: 10.1038/ni.2057. Nat Immunol. 2011. PMID: 21706005
The long intergenic noncoding RNA landscape of human lymphocytes highlights the regulation of T cell differentiation by linc-MAF-4.
Ranzani V, Rossetti G, Panzeri I, Arrigoni A, Bonnal RJ, Curti S, Gruarin P, Provasi E, Sugliano E, Marconi M, De Francesco R, Geginat J, Bodega B, Abrignani S, Pagani M. Ranzani V, et al. Among authors: pagani m. Nat Immunol. 2015 Mar;16(3):318-325. doi: 10.1038/ni.3093. Epub 2015 Jan 26. Nat Immunol. 2015. PMID: 25621826 Free PMC article.
miRiadne: a web tool for consistent integration of miRNA nomenclature.
Bonnal RJ, Rossi RL, Carpi D, Ranzani V, Abrignani S, Pagani M. Bonnal RJ, et al. Among authors: pagani m. Nucleic Acids Res. 2015 Jul 1;43(W1):W487-92. doi: 10.1093/nar/gkv381. Epub 2015 Apr 20. Nucleic Acids Res. 2015. PMID: 25897123 Free PMC article.
Analysis RNA-seq and Noncoding RNA.
Arrigoni A, Ranzani V, Rossetti G, Panzeri I, Abrignani S, Bonnal RJ, Pagani M. Arrigoni A, et al. Among authors: pagani m. Methods Mol Biol. 2016;1480:125-35. doi: 10.1007/978-1-4939-6380-5_11. Methods Mol Biol. 2016. PMID: 27659980
Transcriptional Landscape of Human Tissue Lymphocytes Unveils Uniqueness of Tumor-Infiltrating T Regulatory Cells.
De Simone M, Arrigoni A, Rossetti G, Gruarin P, Ranzani V, Politano C, Bonnal RJP, Provasi E, Sarnicola ML, Panzeri I, Moro M, Crosti M, Mazzara S, Vaira V, Bosari S, Palleschi A, Santambrogio L, Bovo G, Zucchini N, Totis M, Gianotti L, Cesana G, Perego RA, Maroni N, Pisani Ceretti A, Opocher E, De Francesco R, Geginat J, Stunnenberg HG, Abrignani S, Pagani M. De Simone M, et al. Among authors: pagani m. Immunity. 2016 Nov 15;45(5):1135-1147. doi: 10.1016/j.immuni.2016.10.021. Immunity. 2016. PMID: 27851914 Free PMC article.
841 results