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Page 1
Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics.
Bonnal RJ, Aerts J, Githinji G, Goto N, MacLean D, Miller CA, Mishima H, Pagani M, Ramirez-Gonzalez R, Smant G, Strozzi F, Syme R, Vos R, Wennblom TJ, Woodcroft BJ, Katayama T, Prins P. Bonnal RJ, et al. Among authors: prins p. Bioinformatics. 2012 Apr 1;28(7):1035-7. doi: 10.1093/bioinformatics/bts080. Epub 2012 Feb 12. Bioinformatics. 2012. PMID: 22332238 Free PMC article.
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*.
Katayama T, Arakawa K, Nakao M, Ono K, Aoki-Kinoshita KF, Yamamoto Y, Yamaguchi A, Kawashima S, Chun HW, Aerts J, Aranda B, Barboza LH, Bonnal RJ, Bruskiewich R, Bryne JC, Fernández JM, Funahashi A, Gordon PM, Goto N, Groscurth A, Gutteridge A, Holland R, Kano Y, Kawas EA, Kerhornou A, Kibukawa E, Kinjo AR, Kuhn M, Lapp H, Lehvaslaiho H, Nakamura H, Nakamura Y, Nishizawa T, Nobata C, Noguchi T, Oinn TM, Okamoto S, Owen S, Pafilis E, Pocock M, Prins P, Ranzinger R, Reisinger F, Salwinski L, Schreiber M, Senger M, Shigemoto Y, Standley DM, Sugawara H, Tashiro T, Trelles O, Vos RA, Wilkinson MD, York W, Zmasek CM, Asai K, Takagi T. Katayama T, et al. Among authors: prins p. J Biomed Semantics. 2010 Aug 21;1(1):8. doi: 10.1186/2041-1480-1-8. J Biomed Semantics. 2010. PMID: 20727200 Free PMC article.
BioRuby: bioinformatics software for the Ruby programming language.
Goto N, Prins P, Nakao M, Bonnal R, Aerts J, Katayama T. Goto N, et al. Among authors: prins p. Bioinformatics. 2010 Oct 15;26(20):2617-9. doi: 10.1093/bioinformatics/btq475. Epub 2010 Aug 25. Bioinformatics. 2010. PMID: 20739307 Free PMC article.
xQTL workbench: a scalable web environment for multi-level QTL analysis.
Arends D, van der Velde KJ, Prins P, Broman KW, Möller S, Jansen RC, Swertz MA. Arends D, et al. Among authors: prins p. Bioinformatics. 2012 Apr 1;28(7):1042-4. doi: 10.1093/bioinformatics/bts049. Epub 2012 Feb 3. Bioinformatics. 2012. PMID: 22308096 Free PMC article.
Genetical genomics for evolutionary studies.
Prins P, Smant G, Jansen RC. Prins P, et al. Methods Mol Biol. 2012;856:469-85. doi: 10.1007/978-1-61779-585-5_19. Methods Mol Biol. 2012. PMID: 22399471
Scalable computing for evolutionary genomics.
Prins P, Belhachemi D, Möller S, Smant G. Prins P, et al. Methods Mol Biol. 2012;856:529-45. doi: 10.1007/978-1-61779-585-5_22. Methods Mol Biol. 2012. PMID: 22399474
Fast probabilistic file fingerprinting for big data.
Tretyakov K, Laur S, Smant G, Vilo J, Prins P. Tretyakov K, et al. Among authors: prins p. BMC Genomics. 2013;14 Suppl 2(Suppl 2):S8. doi: 10.1186/1471-2164-14-S2-S8. Epub 2013 Feb 15. BMC Genomics. 2013. PMID: 23445565 Free PMC article.
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.
Katayama T, Wilkinson MD, Aoki-Kinoshita KF, Kawashima S, Yamamoto Y, Yamaguchi A, Okamoto S, Kawano S, Kim JD, Wang Y, Wu H, Kano Y, Ono H, Bono H, Kocbek S, Aerts J, Akune Y, Antezana E, Arakawa K, Aranda B, Baran J, Bolleman J, Bonnal RJ, Buttigieg PL, Campbell MP, Chen YA, Chiba H, Cock PJ, Cohen KB, Constantin A, Duck G, Dumontier M, Fujisawa T, Fujiwara T, Goto N, Hoehndorf R, Igarashi Y, Itaya H, Ito M, Iwasaki W, Kalaš M, Katoda T, Kim T, Kokubu A, Komiyama Y, Kotera M, Laibe C, Lapp H, Lütteke T, Marshall MS, Mori T, Mori H, Morita M, Murakami K, Nakao M, Narimatsu H, Nishide H, Nishimura Y, Nystrom-Persson J, Ogishima S, Okamura Y, Okuda S, Oshita K, Packer NH, Prins P, Ranzinger R, Rocca-Serra P, Sansone S, Sawaki H, Shin SH, Splendiani A, Strozzi F, Tadaka S, Toukach P, Uchiyama I, Umezaki M, Vos R, Whetzel PL, Yamada I, Yamasaki C, Yamashita R, York WS, Zmasek CM, Kawamoto S, Takagi T. Katayama T, et al. Among authors: prins p. J Biomed Semantics. 2014 Feb 5;5(1):5. doi: 10.1186/2041-1480-5-5. J Biomed Semantics. 2014. PMID: 24495517 Free PMC article.
226 results