Goodarzi H - Search Results

1

Systematic discovery of structural elements governing stability of mammalian messenger RNAs.

Goodarzi H, Najafabadi HS, Oikonomou P, Greco TM, Fish L, Salavati R, Cristea IM, Tavazoie S. Goodarzi H, et al. Nature. 2012 Apr 8;485(7397):264-8. doi: 10.1038/nature11013. Nature. 2012. PMID: 22495308 Free PMC article.

2

Correspondence regarding Bharanidharan et al., "Correlations between nucleotide frequencies and amino acid composition in 115 bacterial species".

Najafabadi HS, Goodarzi H. Najafabadi HS, et al. Among authors: goodarzi h. Biochem Biophys Res Commun. 2004 Dec 3;325(1):1-2. doi: 10.1016/j.bbrc.2004.09.183. Biochem Biophys Res Commun. 2004. PMID: 15522192

3

On the optimality of the genetic code, with the consideration of coevolution theory by comparison of prominent cost measure matrices.

Goodarzi H, Najafabadi HS, Hassani K, Nejad HA, Torabi N. Goodarzi H, et al. J Theor Biol. 2005 Aug 7;235(3):318-25. doi: 10.1016/j.jtbi.2005.01.012. J Theor Biol. 2005. PMID: 15882694

4

Optimality of codon usage in Escherichia coli due to load minimization.

Najafabadi HS, Goodarzi H, Torabi N. Najafabadi HS, et al. Among authors: goodarzi h. J Theor Biol. 2005 Nov 21;237(2):203-9. doi: 10.1016/j.jtbi.2005.04.007. Epub 2005 Jun 1. J Theor Biol. 2005. PMID: 15932760

5

Designing a neural network for the constraint optimization of the fitness functions devised based on the load minimization of the genetic code.

Goodarzi H, Najafabadi HS, Torabi N. Goodarzi H, et al. Biosystems. 2005 Aug;81(2):91-100. doi: 10.1016/j.biosystems.2005.02.002. Biosystems. 2005. PMID: 15936137

6

The impact of including tRNA content on the optimality of the genetic code.

Goodarzi H, Najafabadi HS, Nejad HA, Torabi N. Goodarzi H, et al. Bull Math Biol. 2005 Nov;67(6):1355-68. doi: 10.1016/j.bulm.2005.03.002. Bull Math Biol. 2005. PMID: 16005951

7

Applying a neural network to predict the thermodynamic parameters for an expanded nearest-neighbor model.

Najafabadi HS, Goodarzi H, Torabi N, Banihosseini SS. Najafabadi HS, et al. Among authors: goodarzi h. J Theor Biol. 2006 Feb 7;238(3):657-65. doi: 10.1016/j.jtbi.2005.06.014. Epub 2005 Aug 2. J Theor Biol. 2006. PMID: 16061260

8

Solvent accessibility, residue charge and residue volume, the three ingredients of a robust amino acid substitution matrix.

Goodarzi H, Katanforoush A, Torabi N, Najafabadi HS. Goodarzi H, et al. J Theor Biol. 2007 Apr 21;245(4):715-25. doi: 10.1016/j.jtbi.2006.12.014. Epub 2006 Dec 19. J Theor Biol. 2007. PMID: 17240399

9

Amino acid and codon usage profiles: adaptive changes in the frequency of amino acids and codons.

Goodarzi H, Torabi N, Najafabadi HS, Archetti M. Goodarzi H, et al. Gene. 2008 Jan 15;407(1-2):30-41. doi: 10.1016/j.gene.2007.09.020. Epub 2007 Oct 5. Gene. 2008. PMID: 17977670

10

Genetic dissection of an exogenously induced biofilm in laboratory and clinical isolates of E. coli.

Amini S, Goodarzi H, Tavazoie S. Amini S, et al. Among authors: goodarzi h. PLoS Pathog. 2009 May;5(5):e1000432. doi: 10.1371/journal.ppat.1000432. Epub 2009 May 15. PLoS Pathog. 2009. PMID: 19436718 Free PMC article.

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