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Origins of the genetic code: the escaped triplet theory.
Yarus M, Caporaso JG, Knight R. Yarus M, et al. Among authors: knight r. Annu Rev Biochem. 2005;74:179-98. doi: 10.1146/annurev.biochem.74.082803.133119. Annu Rev Biochem. 2005. PMID: 15952885 Review.
PyCogent: a toolkit for making sense from sequence.
Knight R, Maxwell P, Birmingham A, Carnes J, Caporaso JG, Easton BC, Eaton M, Hamady M, Lindsay H, Liu Z, Lozupone C, McDonald D, Robeson M, Sammut R, Smit S, Wakefield MJ, Widmann J, Wikman S, Wilson S, Ying H, Huttley GA. Knight R, et al. Genome Biol. 2007;8(8):R171. doi: 10.1186/gb-2007-8-8-r171. Genome Biol. 2007. PMID: 17708774 Free PMC article.
PyNAST: a flexible tool for aligning sequences to a template alignment.
Caporaso JG, Bittinger K, Bushman FD, DeSantis TZ, Andersen GL, Knight R. Caporaso JG, et al. Among authors: knight r. Bioinformatics. 2010 Jan 15;26(2):266-7. doi: 10.1093/bioinformatics/btp636. Epub 2009 Nov 13. Bioinformatics. 2010. PMID: 19914921 Free PMC article.
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample.
Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Lozupone CA, Turnbaugh PJ, Fierer N, Knight R. Caporaso JG, et al. Among authors: knight r. Proc Natl Acad Sci U S A. 2011 Mar 15;108 Suppl 1(Suppl 1):4516-22. doi: 10.1073/pnas.1000080107. Epub 2010 Jun 3. Proc Natl Acad Sci U S A. 2011. PMID: 20534432 Free PMC article.
3,444 results