Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Search Page

Filters

My Custom Filters

Publication date

Text availability

Article attribute

Article type

Additional filters

Article Language

Species

Sex

Age

Other

Search Results

47 results

Filters applied: . Clear all
Results are displayed in a computed author sort order. The Publication Date timeline is not available.
Page 1
BEDOPS: high-performance genomic feature operations.
Neph S, Kuehn MS, Reynolds AP, Haugen E, Thurman RE, Johnson AK, Rynes E, Maurano MT, Vierstra J, Thomas S, Sandstrom R, Humbert R, Stamatoyannopoulos JA. Neph S, et al. Among authors: reynolds ap. Bioinformatics. 2012 Jul 15;28(14):1919-20. doi: 10.1093/bioinformatics/bts277. Epub 2012 May 9. Bioinformatics. 2012. PMID: 22576172 Free PMC article.
Operating on Genomic Ranges Using BEDOPS.
Neph S, Reynolds AP, Kuehn MS, Stamatoyannopoulos JA. Neph S, et al. Among authors: reynolds ap. Methods Mol Biol. 2016;1418:267-81. doi: 10.1007/978-1-4939-3578-9_14. Methods Mol Biol. 2016. PMID: 27008020
Global mapping of protein-DNA interactions in vivo by digital genomic footprinting.
Hesselberth JR, Chen X, Zhang Z, Sabo PJ, Sandstrom R, Reynolds AP, Thurman RE, Neph S, Kuehn MS, Noble WS, Fields S, Stamatoyannopoulos JA. Hesselberth JR, et al. Among authors: reynolds ap. Nat Methods. 2009 Apr;6(4):283-9. doi: 10.1038/nmeth.1313. Epub 2009 Mar 22. Nat Methods. 2009. PMID: 19305407 Free PMC article.
The accessible chromatin landscape of the human genome.
Thurman RE, Rynes E, Humbert R, Vierstra J, Maurano MT, Haugen E, Sheffield NC, Stergachis AB, Wang H, Vernot B, Garg K, John S, Sandstrom R, Bates D, Boatman L, Canfield TK, Diegel M, Dunn D, Ebersol AK, Frum T, Giste E, Johnson AK, Johnson EM, Kutyavin T, Lajoie B, Lee BK, Lee K, London D, Lotakis D, Neph S, Neri F, Nguyen ED, Qu H, Reynolds AP, Roach V, Safi A, Sanchez ME, Sanyal A, Shafer A, Simon JM, Song L, Vong S, Weaver M, Yan Y, Zhang Z, Zhang Z, Lenhard B, Tewari M, Dorschner MO, Hansen RS, Navas PA, Stamatoyannopoulos G, Iyer VR, Lieb JD, Sunyaev SR, Akey JM, Sabo PJ, Kaul R, Furey TS, Dekker J, Crawford GE, Stamatoyannopoulos JA. Thurman RE, et al. Among authors: reynolds ap. Nature. 2012 Sep 6;489(7414):75-82. doi: 10.1038/nature11232. Nature. 2012. PMID: 22955617 Free PMC article.
An expansive human regulatory lexicon encoded in transcription factor footprints.
Neph S, Vierstra J, Stergachis AB, Reynolds AP, Haugen E, Vernot B, Thurman RE, John S, Sandstrom R, Johnson AK, Maurano MT, Humbert R, Rynes E, Wang H, Vong S, Lee K, Bates D, Diegel M, Roach V, Dunn D, Neri J, Schafer A, Hansen RS, Kutyavin T, Giste E, Weaver M, Canfield T, Sabo P, Zhang M, Balasundaram G, Byron R, MacCoss MJ, Akey JM, Bender MA, Groudine M, Kaul R, Stamatoyannopoulos JA. Neph S, et al. Among authors: reynolds ap. Nature. 2012 Sep 6;489(7414):83-90. doi: 10.1038/nature11212. Nature. 2012. PMID: 22955618 Free PMC article.
eFORGE v2.0: updated analysis of cell type-specific signal in epigenomic data.
Breeze CE, Reynolds AP, van Dongen J, Dunham I, Lazar J, Neph S, Vierstra J, Bourque G, Teschendorff AE, Stamatoyannopoulos JA, Beck S. Breeze CE, et al. Among authors: reynolds ap. Bioinformatics. 2019 Nov 1;35(22):4767-4769. doi: 10.1093/bioinformatics/btz456. Bioinformatics. 2019. PMID: 31161210 Free PMC article.
Developmental fate and cellular maturity encoded in human regulatory DNA landscapes.
Stergachis AB, Neph S, Reynolds A, Humbert R, Miller B, Paige SL, Vernot B, Cheng JB, Thurman RE, Sandstrom R, Haugen E, Heimfeld S, Murry CE, Akey JM, Stamatoyannopoulos JA. Stergachis AB, et al. Cell. 2013 Aug 15;154(4):888-903. doi: 10.1016/j.cell.2013.07.020. Cell. 2013. PMID: 23953118 Free PMC article.
Systematic localization of common disease-associated variation in regulatory DNA.
Maurano MT, Humbert R, Rynes E, Thurman RE, Haugen E, Wang H, Reynolds AP, Sandstrom R, Qu H, Brody J, Shafer A, Neri F, Lee K, Kutyavin T, Stehling-Sun S, Johnson AK, Canfield TK, Giste E, Diegel M, Bates D, Hansen RS, Neph S, Sabo PJ, Heimfeld S, Raubitschek A, Ziegler S, Cotsapas C, Sotoodehnia N, Glass I, Sunyaev SR, Kaul R, Stamatoyannopoulos JA. Maurano MT, et al. Among authors: reynolds ap. Science. 2012 Sep 7;337(6099):1190-5. doi: 10.1126/science.1222794. Epub 2012 Sep 5. Science. 2012. PMID: 22955828 Free PMC article.
Genome-scale mapping of DNase I hypersensitivity.
John S, Sabo PJ, Canfield TK, Lee K, Vong S, Weaver M, Wang H, Vierstra J, Reynolds AP, Thurman RE, Stamatoyannopoulos JA. John S, et al. Among authors: reynolds ap. Curr Protoc Mol Biol. 2013 Jul;Chapter 27:Unit 21.27. doi: 10.1002/0471142727.mb2127s103. Curr Protoc Mol Biol. 2013. PMID: 23821440 Free PMC article.
47 results