Smyth GK - Search Results

1

Effective adjunctive therapy by an innate defense regulatory peptide in a preclinical model of severe malaria.

Achtman AH, Pilat S, Law CW, Lynn DJ, Janot L, Mayer ML, Ma S, Kindrachuk J, Finlay BB, Brinkman FS, Smyth GK, Hancock RE, Schofield L. Achtman AH, et al. Among authors: smyth gk. Sci Transl Med. 2012 May 23;4(135):135ra64. doi: 10.1126/scitranslmed.3003515. Sci Transl Med. 2012. PMID: 22623740

2

Estimating the proportion of microarray probes expressed in an RNA sample.

Shi W, de Graaf CA, Kinkel SA, Achtman AH, Baldwin T, Schofield L, Scott HS, Hilton DJ, Smyth GK. Shi W, et al. Among authors: smyth gk. Nucleic Acids Res. 2010 Apr;38(7):2168-76. doi: 10.1093/nar/gkp1204. Epub 2010 Jan 7. Nucleic Acids Res. 2010. PMID: 20056656 Free PMC article.

3

DNMT3L is a regulator of X chromosome compaction and post-meiotic gene transcription.

Zamudio NM, Scott HS, Wolski K, Lo CY, Law C, Leong D, Kinkel SA, Chong S, Jolley D, Smyth GK, de Kretser D, Whitelaw E, O'Bryan MK. Zamudio NM, et al. Among authors: smyth gk. PLoS One. 2011 Mar 31;6(3):e18276. doi: 10.1371/journal.pone.0018276. PLoS One. 2011. PMID: 21483837 Free PMC article.

4

voom: Precision weights unlock linear model analysis tools for RNA-seq read counts.

Law CW, Chen Y, Shi W, Smyth GK. Law CW, et al. Among authors: smyth gk. Genome Biol. 2014 Feb 3;15(2):R29. doi: 10.1186/gb-2014-15-2-r29. Genome Biol. 2014. PMID: 24485249 Free PMC article.

5

limma powers differential expression analyses for RNA-sequencing and microarray studies.

Ritchie ME, Phipson B, Wu D, Hu Y, Law CW, Shi W, Smyth GK. Ritchie ME, et al. Among authors: smyth gk. Nucleic Acids Res. 2015 Apr 20;43(7):e47. doi: 10.1093/nar/gkv007. Epub 2015 Jan 20. Nucleic Acids Res. 2015. PMID: 25605792 Free PMC article.

6

RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR.

Law CW, Alhamdoosh M, Su S, Dong X, Tian L, Smyth GK, Ritchie ME. Law CW, et al. Among authors: smyth gk. F1000Res. 2016 Jun 17;5:ISCB Comm J-1408. doi: 10.12688/f1000research.9005.3. eCollection 2016. F1000Res. 2016. PMID: 27441086 Free PMC article.

7

RNA-seq mixology: designing realistic control experiments to compare protocols and analysis methods.

Holik AZ, Law CW, Liu R, Wang Z, Wang W, Ahn J, Asselin-Labat ML, Smyth GK, Ritchie ME. Holik AZ, et al. Among authors: smyth gk. Nucleic Acids Res. 2017 Mar 17;45(5):e30. doi: 10.1093/nar/gkw1063. Nucleic Acids Res. 2017. PMID: 27899618 Free PMC article.

8

Identification of quiescent and spatially restricted mammary stem cells that are hormone responsive.

Fu NY, Rios AC, Pal B, Law CW, Jamieson P, Liu R, Vaillant F, Jackling F, Liu KH, Smyth GK, Lindeman GJ, Ritchie ME, Visvader JE. Fu NY, et al. Among authors: smyth gk. Nat Cell Biol. 2017 Mar;19(3):164-176. doi: 10.1038/ncb3471. Epub 2017 Feb 13. Nat Cell Biol. 2017. PMID: 28192422

9

Germline heterozygous mutations in Nxf1 perturb RNA metabolism and trigger thrombocytopenia and lymphopenia in mice.

Chappaz S, Law CW, Dowling MR, Carey KT, Lane RM, Ngo LH, Wickramasinghe VO, Smyth GK, Ritchie ME, Kile BT. Chappaz S, et al. Among authors: smyth gk. Blood Adv. 2020 Apr 14;4(7):1270-1283. doi: 10.1182/bloodadvances.2019001323. Blood Adv. 2020. PMID: 32236527 Free PMC article.

10

A guide to creating design matrices for gene expression experiments.

Law CW, Zeglinski K, Dong X, Alhamdoosh M, Smyth GK, Ritchie ME. Law CW, et al. Among authors: smyth gk. F1000Res. 2020 Dec 10;9:1444. doi: 10.12688/f1000research.27893.1. eCollection 2020. F1000Res. 2020. PMID: 33604029 Free PMC article.

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