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Fiji: an open-source platform for biological-image analysis.
Schindelin J, Arganda-Carreras I, Frise E, Kaynig V, Longair M, Pietzsch T, Preibisch S, Rueden C, Saalfeld S, Schmid B, Tinevez JY, White DJ, Hartenstein V, Eliceiri K, Tomancak P, Cardona A. Schindelin J, et al. Among authors: tinevez jy. Nat Methods. 2012 Jun 28;9(7):676-82. doi: 10.1038/nmeth.2019. Nat Methods. 2012. PMID: 22743772 Free PMC article.
Objective comparison of particle tracking methods.
Chenouard N, Smal I, de Chaumont F, Maška M, Sbalzarini IF, Gong Y, Cardinale J, Carthel C, Coraluppi S, Winter M, Cohen AR, Godinez WJ, Rohr K, Kalaidzidis Y, Liang L, Duncan J, Shen H, Xu Y, Magnusson KE, Jaldén J, Blau HM, Paul-Gilloteaux P, Roudot P, Kervrann C, Waharte F, Tinevez JY, Shorte SL, Willemse J, Celler K, van Wezel GP, Dan HW, Tsai YS, Ortiz de Solórzano C, Olivo-Marin JC, Meijering E. Chenouard N, et al. Among authors: tinevez jy. Nat Methods. 2014 Mar;11(3):281-9. doi: 10.1038/nmeth.2808. Epub 2014 Jan 19. Nat Methods. 2014. PMID: 24441936 Free PMC article.
TrackMate: An open and extensible platform for single-particle tracking.
Tinevez JY, Perry N, Schindelin J, Hoopes GM, Reynolds GD, Laplantine E, Bednarek SY, Shorte SL, Eliceiri KW. Tinevez JY, et al. Methods. 2017 Feb 15;115:80-90. doi: 10.1016/j.ymeth.2016.09.016. Epub 2016 Oct 3. Methods. 2017. PMID: 27713081 Free article.
TrackMate 7: integrating state-of-the-art segmentation algorithms into tracking pipelines.
Ershov D, Phan MS, Pylvänäinen JW, Rigaud SU, Le Blanc L, Charles-Orszag A, Conway JRW, Laine RF, Roy NH, Bonazzi D, Duménil G, Jacquemet G, Tinevez JY. Ershov D, et al. Among authors: tinevez jy. Nat Methods. 2022 Jul;19(7):829-832. doi: 10.1038/s41592-022-01507-1. Epub 2022 Jun 2. Nat Methods. 2022. PMID: 35654950 Free article.
Object Segmentation and Ground Truth in 3D Embryonic Imaging.
Rajasekaran B, Uriu K, Valentin G, Tinevez JY, Oates AC. Rajasekaran B, et al. Among authors: tinevez jy. PLoS One. 2016 Jun 22;11(6):e0150853. doi: 10.1371/journal.pone.0150853. eCollection 2016. PLoS One. 2016. PMID: 27332860 Free PMC article.
Automated cell tracking using StarDist and TrackMate.
Fazeli E, Roy NH, Follain G, Laine RF, von Chamier L, Hänninen PE, Eriksson JE, Tinevez JY, Jacquemet G. Fazeli E, et al. Among authors: tinevez jy. F1000Res. 2020 Oct 28;9:1279. doi: 10.12688/f1000research.27019.1. eCollection 2020. F1000Res. 2020. PMID: 33224481 Free PMC article.
51 results