Kim PM - Search Results

1

Tissue-specific alternative splicing remodels protein-protein interaction networks.

Ellis JD, Barrios-Rodiles M, Colak R, Irimia M, Kim T, Calarco JA, Wang X, Pan Q, O'Hanlon D, Kim PM, Wrana JL, Blencowe BJ. Ellis JD, et al. Among authors: kim t, kim pm. Mol Cell. 2012 Jun 29;46(6):884-92. doi: 10.1016/j.molcel.2012.05.037. Mol Cell. 2012. PMID: 22749401 Free article.

2

The multiple-specificity landscape of modular peptide recognition domains.

Gfeller D, Butty F, Wierzbicka M, Verschueren E, Vanhee P, Huang H, Ernst A, Dar N, Stagljar I, Serrano L, Sidhu SS, Bader GD, Kim PM. Gfeller D, et al. Among authors: kim pm. Mol Syst Biol. 2011 Apr 26;7:484. doi: 10.1038/msb.2011.18. Mol Syst Biol. 2011. PMID: 21525870 Free PMC article.

3

An omics perspective of protein disorder.

Bellay J, Michaut M, Kim T, Han S, Colak R, Myers CL, Kim PM. Bellay J, et al. Among authors: kim t, kim pm. Mol Biosyst. 2012 Jan;8(1):185-93. doi: 10.1039/c1mb05235g. Epub 2011 Nov 18. Mol Biosyst. 2012. PMID: 22101230 Review.

4

MUSI: an integrated system for identifying multiple specificity from very large peptide or nucleic acid data sets.

Kim T, Tyndel MS, Huang H, Sidhu SS, Bader GD, Gfeller D, Kim PM. Kim T, et al. Among authors: kim pm. Nucleic Acids Res. 2012 Mar;40(6):e47. doi: 10.1093/nar/gkr1294. Epub 2011 Dec 30. Nucleic Acids Res. 2012. PMID: 22210894 Free PMC article.

5

Computational structural analysis of protein interactions and networks.

Hooda Y, Kim PM. Hooda Y, et al. Among authors: kim pm. Proteomics. 2012 May;12(10):1697-705. doi: 10.1002/pmic.201100597. Proteomics. 2012. PMID: 22593000 Review.

6

The evolutionary landscape of alternative splicing in vertebrate species.

Barbosa-Morais NL, Irimia M, Pan Q, Xiong HY, Gueroussov S, Lee LJ, Slobodeniuc V, Kutter C, Watt S, Colak R, Kim T, Misquitta-Ali CM, Wilson MD, Kim PM, Odom DT, Frey BJ, Blencowe BJ. Barbosa-Morais NL, et al. Among authors: kim t, kim pm. Science. 2012 Dec 21;338(6114):1587-93. doi: 10.1126/science.1230612. Science. 2012. PMID: 23258890

7

Distinct types of disorder in the human proteome: functional implications for alternative splicing.

Colak R, Kim T, Michaut M, Sun M, Irimia M, Bellay J, Myers CL, Blencowe BJ, Kim PM. Colak R, et al. Among authors: kim t, kim pm. PLoS Comput Biol. 2013 Apr;9(4):e1003030. doi: 10.1371/journal.pcbi.1003030. Epub 2013 Apr 25. PLoS Comput Biol. 2013. PMID: 23633940 Free PMC article.

8

Identification of a major determinant for serine-threonine kinase phosphoacceptor specificity.

Chen C, Ha BH, Thévenin AF, Lou HJ, Zhang R, Yip KY, Peterson JR, Gerstein M, Kim PM, Filippakopoulos P, Knapp S, Boggon TJ, Turk BE. Chen C, et al. Among authors: kim pm. Mol Cell. 2014 Jan 9;53(1):140-7. doi: 10.1016/j.molcel.2013.11.013. Epub 2013 Dec 26. Mol Cell. 2014. PMID: 24374310 Free PMC article.

9

A systematic approach to identify novel cancer drug targets using machine learning, inhibitor design and high-throughput screening.

Jeon J, Nim S, Teyra J, Datti A, Wrana JL, Sidhu SS, Moffat J, Kim PM. Jeon J, et al. Among authors: kim pm. Genome Med. 2014 Jul 30;6(7):57. doi: 10.1186/s13073-014-0057-7. eCollection 2014. Genome Med. 2014. PMID: 25165489 Free PMC article.

10

Combining structural modeling with ensemble machine learning to accurately predict protein fold stability and binding affinity effects upon mutation.

Berliner N, Teyra J, Colak R, Garcia Lopez S, Kim PM. Berliner N, et al. Among authors: kim pm. PLoS One. 2014 Sep 22;9(9):e107353. doi: 10.1371/journal.pone.0107353. eCollection 2014. PLoS One. 2014. PMID: 25243403 Free PMC article.

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