Takada S - Search Results

1

Energy landscape and multiroute folding of topologically complex proteins adenylate kinase and 2ouf-knot.

Li W, Terakawa T, Wang W, Takada S. Li W, et al. Among authors: takada s. Proc Natl Acad Sci U S A. 2012 Oct 30;109(44):17789-94. doi: 10.1073/pnas.1201807109. Epub 2012 Jul 2. Proc Natl Acad Sci U S A. 2012. PMID: 22753508 Free PMC article.

2

How protein thermodynamics and folding mechanisms are altered by the chaperonin cage: molecular simulations.

Takagi F, Koga N, Takada S. Takagi F, et al. Among authors: takada s. Proc Natl Acad Sci U S A. 2003 Sep 30;100(20):11367-72. doi: 10.1073/pnas.1831920100. Epub 2003 Aug 28. Proc Natl Acad Sci U S A. 2003. PMID: 12947041 Free PMC article.

3

Shaping up the protein folding funnel by local interaction: lesson from a structure prediction study.

Chikenji G, Fujitsuka Y, Takada S. Chikenji G, et al. Among authors: takada s. Proc Natl Acad Sci U S A. 2006 Feb 28;103(9):3141-6. doi: 10.1073/pnas.0508195103. Epub 2006 Feb 17. Proc Natl Acad Sci U S A. 2006. PMID: 16488978 Free PMC article.

4

Secondary structure provides a template for the folding of nearby polypeptides.

Kameda T, Takada S. Kameda T, et al. Among authors: takada s. Proc Natl Acad Sci U S A. 2006 Nov 21;103(47):17765-70. doi: 10.1073/pnas.0602632103. Epub 2006 Nov 13. Proc Natl Acad Sci U S A. 2006. PMID: 17101976 Free PMC article.

5

Folding energy landscape and network dynamics of small globular proteins.

Hori N, Chikenji G, Berry RS, Takada S. Hori N, et al. Among authors: takada s. Proc Natl Acad Sci U S A. 2009 Jan 6;106(1):73-8. doi: 10.1073/pnas.0811560106. Epub 2008 Dec 29. Proc Natl Acad Sci U S A. 2009. PMID: 19114654 Free PMC article.

6

Self-learning multiscale simulation for achieving high accuracy and high efficiency simultaneously.

Li W, Takada S. Li W, et al. Among authors: takada s. J Chem Phys. 2009 Jun 7;130(21):214108. doi: 10.1063/1.3146922. J Chem Phys. 2009. PMID: 19508057

7

Multiscale methods for protein folding simulations.

Li W, Yoshii H, Hori N, Kameda T, Takada S. Li W, et al. Among authors: takada s. Methods. 2010 Sep;52(1):106-14. doi: 10.1016/j.ymeth.2010.04.014. Epub 2010 Apr 29. Methods. 2010. PMID: 20434561

8

Characterizing protein energy landscape by self-learning multiscale simulations: application to a designed β-hairpin.

Li W, Takada S. Li W, et al. Among authors: takada s. Biophys J. 2010 Nov 3;99(9):3029-37. doi: 10.1016/j.bpj.2010.08.041. Biophys J. 2010. PMID: 21044601 Free PMC article.

9

Frustration, specific sequence dependence, and nonlinearity in large-amplitude fluctuations of allosteric proteins.

Li W, Wolynes PG, Takada S. Li W, et al. Among authors: takada s. Proc Natl Acad Sci U S A. 2011 Mar 1;108(9):3504-9. doi: 10.1073/pnas.1018983108. Epub 2011 Feb 9. Proc Natl Acad Sci U S A. 2011. PMID: 21307307 Free PMC article.

10

On easy implementation of a variant of the replica exchange with solute tempering in GROMACS.

Terakawa T, Kameda T, Takada S. Terakawa T, et al. Among authors: takada s. J Comput Chem. 2011 May;32(7):1228-34. doi: 10.1002/jcc.21703. Epub 2010 Nov 29. J Comput Chem. 2011. PMID: 21425280

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My Custom Filters

Publication date

Text availability

Article attribute

Article type

Article Language

Species

Sex

Age

Other

1,568 results

Search Page

Filters