Simmons SL - Search Results

1

Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates.

Xia LC, Steele JA, Cram JA, Cardon ZG, Simmons SL, Vallino JJ, Fuhrman JA, Sun F. Xia LC, et al. Among authors: simmons sl. BMC Syst Biol. 2011;5 Suppl 2(Suppl 2):S15. doi: 10.1186/1752-0509-5-S2-S15. Epub 2011 Dec 14. BMC Syst Biol. 2011. PMID: 22784572 Free PMC article.

2

The dynamic genetic repertoire of microbial communities.

Wilmes P, Simmons SL, Denef VJ, Banfield JF. Wilmes P, et al. Among authors: simmons sl. FEMS Microbiol Rev. 2009 Jan;33(1):109-32. doi: 10.1111/j.1574-6976.2008.00144.x. Epub 2008 Nov 24. FEMS Microbiol Rev. 2009. PMID: 19054116 Free PMC article. Review.

3

Community-wide analysis of microbial genome sequence signatures.

Dick GJ, Andersson AF, Baker BJ, Simmons SL, Thomas BC, Yelton AP, Banfield JF. Dick GJ, et al. Among authors: simmons sl. Genome Biol. 2009;10(8):R85. doi: 10.1186/gb-2009-10-8-r85. Epub 2009 Aug 21. Genome Biol. 2009. PMID: 19698104 Free PMC article.

4

Population genomic analysis of strain variation in Leptospirillum group II bacteria involved in acid mine drainage formation.

Simmons SL, Dibartolo G, Denef VJ, Goltsman DS, Thelen MP, Banfield JF. Simmons SL, et al. PLoS Biol. 2008 Jul 22;6(7):e177. doi: 10.1371/journal.pbio.0060177. PLoS Biol. 2008. PMID: 18651792 Free PMC article.

5

A semi-quantitative, synteny-based method to improve functional predictions for hypothetical and poorly annotated bacterial and archaeal genes.

Yelton AP, Thomas BC, Simmons SL, Wilmes P, Zemla A, Thelen MP, Justice N, Banfield JF. Yelton AP, et al. Among authors: simmons sl. PLoS Comput Biol. 2011 Oct;7(10):e1002230. doi: 10.1371/journal.pcbi.1002230. Epub 2011 Oct 20. PLoS Comput Biol. 2011. PMID: 22028637 Free PMC article.

6

Functional and phylogenetic assembly of microbial communities in the human microbiome.

Shafquat A, Joice R, Simmons SL, Huttenhower C. Shafquat A, et al. Among authors: simmons sl. Trends Microbiol. 2014 May;22(5):261-6. doi: 10.1016/j.tim.2014.01.011. Epub 2014 Mar 5. Trends Microbiol. 2014. PMID: 24618403 Free PMC article. Review.

7

The effects of variable sample biomass on comparative metagenomics.

Chafee M, Maignien L, Simmons SL. Chafee M, et al. Among authors: simmons sl. Environ Microbiol. 2015 Jul;17(7):2239-53. doi: 10.1111/1462-2920.12668. Epub 2015 Jan 30. Environ Microbiol. 2015. PMID: 25329041

8

A Phase 1b Safety Study of SER-287, a Spore-Based Microbiome Therapeutic, for Active Mild to Moderate Ulcerative Colitis.

Henn MR, O'Brien EJ, Diao L, Feagan BG, Sandborn WJ, Huttenhower C, Wortman JR, McGovern BH, Wang-Weigand S, Lichter DI, Chafee M, Ford CB, Bernardo P, Zhao P, Simmons S, Tomlinson AD, Cook DN, Pomerantz RJ, Misra BK, Auninš JG, Trucksis M. Henn MR, et al. Gastroenterology. 2021 Jan;160(1):115-127.e30. doi: 10.1053/j.gastro.2020.07.048. Epub 2020 Aug 4. Gastroenterology. 2021. PMID: 32763240 Free PMC article. Clinical Trial.

9

Ecological succession and stochastic variation in the assembly of Arabidopsis thaliana phyllosphere communities.

Maignien L, DeForce EA, Chafee ME, Eren AM, Simmons SL. Maignien L, et al. Among authors: simmons sl. mBio. 2014 Jan 21;5(1):e00682-13. doi: 10.1128/mBio.00682-13. mBio. 2014. PMID: 24449749 Free PMC article.

10

Unexpected diversity in populations of the many-celled magnetotactic prokaryote.

Simmons SL, Edwards KJ. Simmons SL, et al. Environ Microbiol. 2007 Jan;9(1):206-15. doi: 10.1111/j.1462-2920.2006.01129.x. Environ Microbiol. 2007. PMID: 17227425

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