Shepherd AJ - Search Results

1

A text-mining system for extracting metabolic reactions from full-text articles.

Czarnecki J, Nobeli I, Smith AM, Shepherd AJ. Czarnecki J, et al. Among authors: shepherd aj. BMC Bioinformatics. 2012 Jul 23;13:172. doi: 10.1186/1471-2105-13-172. BMC Bioinformatics. 2012. PMID: 22823282 Free PMC article.

2

Benchmarking natural-language parsers for biological applications using dependency graphs.

Clegg AB, Shepherd AJ. Clegg AB, et al. Among authors: shepherd aj. BMC Bioinformatics. 2007 Jan 25;8:24. doi: 10.1186/1471-2105-8-24. BMC Bioinformatics. 2007. PMID: 17254351 Free PMC article.

3

Text mining.

Clegg AB, Shepherd AJ. Clegg AB, et al. Among authors: shepherd aj. Methods Mol Biol. 2008;453:471-91. doi: 10.1007/978-1-60327-429-6_25. Methods Mol Biol. 2008. PMID: 18712320

4

Towards a lightweight generic computational grid framework for biological research.

Halling-Brown MD, Moss DS, Shepherd AJ. Halling-Brown MD, et al. Among authors: shepherd aj. BMC Bioinformatics. 2008 Oct 2;9:407. doi: 10.1186/1471-2105-9-407. BMC Bioinformatics. 2008. PMID: 18831735 Free PMC article.

5

A realistic assessment of methods for extracting gene/protein interactions from free text.

Kabiljo R, Clegg AB, Shepherd AJ. Kabiljo R, et al. Among authors: shepherd aj. BMC Bioinformatics. 2009 Jul 28;10:233. doi: 10.1186/1471-2105-10-233. BMC Bioinformatics. 2009. PMID: 19635172 Free PMC article.

6

Mining biological networks from full-text articles.

Czarnecki J, Shepherd AJ. Czarnecki J, et al. Among authors: shepherd aj. Methods Mol Biol. 2014;1159:135-45. doi: 10.1007/978-1-4939-0709-0_8. Methods Mol Biol. 2014. PMID: 24788265 Review.

7

Metabolic Pathway Mining.

Czarnecki JM, Shepherd AJ. Czarnecki JM, et al. Among authors: shepherd aj. Methods Mol Biol. 2017;1526:139-158. doi: 10.1007/978-1-4939-6613-4_8. Methods Mol Biol. 2017. PMID: 27896740

8

Prediction of the location and type of beta-turns in proteins using neural networks.

Shepherd AJ, Gorse D, Thornton JM. Shepherd AJ, et al. Protein Sci. 1999 May;8(5):1045-55. doi: 10.1110/ps.8.5.1045. Protein Sci. 1999. PMID: 10338015 Free PMC article.

9

A novel approach to the recognition of protein architecture from sequence using Fourier analysis and neural networks.

Shepherd AJ, Gorse D, Thornton JM. Shepherd AJ, et al. Proteins. 2003 Feb 1;50(2):290-302. doi: 10.1002/prot.10290. Proteins. 2003. PMID: 12486723

10

PFDB: a generic protein family database integrating the CATH domain structure database with sequence based protein family resources.

Shepherd AJ, Martin NJ, Johnson RG, Kellam P, Orengo CA. Shepherd AJ, et al. Bioinformatics. 2002 Dec;18(12):1666-72. doi: 10.1093/bioinformatics/18.12.1666. Bioinformatics. 2002. PMID: 12490452

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