Lambert JP - Search Results

1

Using ProHits to store, annotate, and analyze affinity purification-mass spectrometry (AP-MS) data.

Liu G, Zhang J, Choi H, Lambert JP, Srikumar T, Larsen B, Nesvizhskii AI, Raught B, Tyers M, Gingras AC. Liu G, et al. Among authors: lambert jp. Curr Protoc Bioinformatics. 2012 Sep;Chapter 8:8.16.1-8.16.32. doi: 10.1002/0471250953.bi0816s39. Curr Protoc Bioinformatics. 2012. PMID: 22948730 Free PMC article.

2

Mapping differential interactomes by affinity purification coupled with data-independent mass spectrometry acquisition.

Lambert JP, Ivosev G, Couzens AL, Larsen B, Taipale M, Lin ZY, Zhong Q, Lindquist S, Vidal M, Aebersold R, Pawson T, Bonner R, Tate S, Gingras AC. Lambert JP, et al. Nat Methods. 2013 Dec;10(12):1239-45. doi: 10.1038/nmeth.2702. Epub 2013 Oct 27. Nat Methods. 2013. PMID: 24162924 Free PMC article.

3

Incorporating DNA shearing in standard affinity purification allows simultaneous identification of both soluble and chromatin-bound interaction partners.

Lambert JP, Tucholska M, Pawson T, Gingras AC. Lambert JP, et al. J Proteomics. 2014 Apr 4;100:55-9. doi: 10.1016/j.jprot.2013.12.022. Epub 2014 Jan 9. J Proteomics. 2014. PMID: 24412199 Free PMC article.

4

SAINTq: Scoring protein-protein interactions in affinity purification - mass spectrometry experiments with fragment or peptide intensity data.

Teo G, Koh H, Fermin D, Lambert JP, Knight JD, Gingras AC, Choi H. Teo G, et al. Among authors: lambert jp. Proteomics. 2016 Aug;16(15-16):2238-45. doi: 10.1002/pmic.201500499. Epub 2016 May 27. Proteomics. 2016. PMID: 27119218

5

Data Independent Acquisition analysis in ProHits 4.0.

Liu G, Knight JD, Zhang JP, Tsou CC, Wang J, Lambert JP, Larsen B, Tyers M, Raught B, Bandeira N, Nesvizhskii AI, Choi H, Gingras AC. Liu G, et al. Among authors: lambert jp. J Proteomics. 2016 Oct 21;149:64-68. doi: 10.1016/j.jprot.2016.04.042. Epub 2016 Apr 29. J Proteomics. 2016. PMID: 27132685 Free PMC article.

6

Mapping physical interactions within chromatin by proteomic approaches.

Lambert JP, Pawson T, Gingras AC. Lambert JP, et al. Proteomics. 2012 May;12(10):1609-22. doi: 10.1002/pmic.201100547. Proteomics. 2012. PMID: 22611019 Review.

7

The CRAPome: a contaminant repository for affinity purification-mass spectrometry data.

Mellacheruvu D, Wright Z, Couzens AL, Lambert JP, St-Denis NA, Li T, Miteva YV, Hauri S, Sardiu ME, Low TY, Halim VA, Bagshaw RD, Hubner NC, Al-Hakim A, Bouchard A, Faubert D, Fermin D, Dunham WH, Goudreault M, Lin ZY, Badillo BG, Pawson T, Durocher D, Coulombe B, Aebersold R, Superti-Furga G, Colinge J, Heck AJ, Choi H, Gstaiger M, Mohammed S, Cristea IM, Bennett KL, Washburn MP, Raught B, Ewing RM, Gingras AC, Nesvizhskii AI. Mellacheruvu D, et al. Among authors: lambert jp. Nat Methods. 2013 Aug;10(8):730-6. doi: 10.1038/nmeth.2557. Epub 2013 Jul 7. Nat Methods. 2013. PMID: 23921808 Free PMC article.

8

Proximity biotinylation and affinity purification are complementary approaches for the interactome mapping of chromatin-associated protein complexes.

Lambert JP, Tucholska M, Go C, Knight JD, Gingras AC. Lambert JP, et al. J Proteomics. 2015 Apr 6;118:81-94. doi: 10.1016/j.jprot.2014.09.011. Epub 2014 Oct 2. J Proteomics. 2015. PMID: 25281560 Free PMC article.

9

MSPLIT-DIA: sensitive peptide identification for data-independent acquisition.

Wang J, Tucholska M, Knight JD, Lambert JP, Tate S, Larsen B, Gingras AC, Bandeira N. Wang J, et al. Among authors: lambert jp. Nat Methods. 2015 Dec;12(12):1106-8. doi: 10.1038/nmeth.3655. Nat Methods. 2015. PMID: 26550773 Free PMC article. No abstract available.

10

The bromodomain-containing protein Ibd1 links multiple chromatin-related protein complexes to highly expressed genes in Tetrahymena thermophila.

Saettone A, Garg J, Lambert JP, Nabeel-Shah S, Ponce M, Burtch A, Thuppu Mudalige C, Gingras AC, Pearlman RE, Fillingham J. Saettone A, et al. Among authors: lambert jp. Epigenetics Chromatin. 2018 Mar 9;11(1):10. doi: 10.1186/s13072-018-0180-6. Epigenetics Chromatin. 2018. PMID: 29523178 Free PMC article.

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