Nesvizhskii AI - Search Results

1

Using ProHits to store, annotate, and analyze affinity purification-mass spectrometry (AP-MS) data.

Liu G, Zhang J, Choi H, Lambert JP, Srikumar T, Larsen B, Nesvizhskii AI, Raught B, Tyers M, Gingras AC. Liu G, et al. Among authors: nesvizhskii ai. Curr Protoc Bioinformatics. 2012 Sep;Chapter 8:8.16.1-8.16.32. doi: 10.1002/0471250953.bi0816s39. Curr Protoc Bioinformatics. 2012. PMID: 22948730 Free PMC article.

2

Analysis of the Saccharomyces cerevisiae proteome with PeptideAtlas.

King NL, Deutsch EW, Ranish JA, Nesvizhskii AI, Eddes JS, Mallick P, Eng J, Desiere F, Flory M, Martin DB, Kim B, Lee H, Raught B, Aebersold R. King NL, et al. Among authors: nesvizhskii ai. Genome Biol. 2006;7(11):R106. doi: 10.1186/gb-2006-7-11-r106. Genome Biol. 2006. PMID: 17101051 Free PMC article.

3

False discovery rates and related statistical concepts in mass spectrometry-based proteomics.

Choi H, Nesvizhskii AI. Choi H, et al. Among authors: nesvizhskii ai. J Proteome Res. 2008 Jan;7(1):47-50. doi: 10.1021/pr700747q. Epub 2007 Dec 8. J Proteome Res. 2008. PMID: 18067251

4

Statistical validation of peptide identifications in large-scale proteomics using the target-decoy database search strategy and flexible mixture modeling.

Choi H, Ghosh D, Nesvizhskii AI. Choi H, et al. Among authors: nesvizhskii ai. J Proteome Res. 2008 Jan;7(1):286-92. doi: 10.1021/pr7006818. Epub 2007 Dec 14. J Proteome Res. 2008. PMID: 18078310

5

Semisupervised model-based validation of peptide identifications in mass spectrometry-based proteomics.

Choi H, Nesvizhskii AI. Choi H, et al. Among authors: nesvizhskii ai. J Proteome Res. 2008 Jan;7(1):254-65. doi: 10.1021/pr070542g. Epub 2007 Dec 27. J Proteome Res. 2008. PMID: 18159924

6

Significance analysis of spectral count data in label-free shotgun proteomics.

Choi H, Fermin D, Nesvizhskii AI. Choi H, et al. Among authors: nesvizhskii ai. Mol Cell Proteomics. 2008 Dec;7(12):2373-85. doi: 10.1074/mcp.M800203-MCP200. Epub 2008 Jul 20. Mol Cell Proteomics. 2008. PMID: 18644780 Free PMC article.

7

A PP2A phosphatase high density interaction network identifies a novel striatin-interacting phosphatase and kinase complex linked to the cerebral cavernous malformation 3 (CCM3) protein.

Goudreault M, D'Ambrosio LM, Kean MJ, Mullin MJ, Larsen BG, Sanchez A, Chaudhry S, Chen GI, Sicheri F, Nesvizhskii AI, Aebersold R, Raught B, Gingras AC. Goudreault M, et al. Among authors: nesvizhskii ai. Mol Cell Proteomics. 2009 Jan;8(1):157-71. doi: 10.1074/mcp.M800266-MCP200. Epub 2008 Sep 8. Mol Cell Proteomics. 2009. PMID: 18782753 Free PMC article.

8

Adaptive discriminant function analysis and reranking of MS/MS database search results for improved peptide identification in shotgun proteomics.

Ding Y, Choi H, Nesvizhskii AI. Ding Y, et al. Among authors: nesvizhskii ai. J Proteome Res. 2008 Nov;7(11):4878-89. doi: 10.1021/pr800484x. Epub 2008 Sep 13. J Proteome Res. 2008. PMID: 18788775 Free PMC article.

9

Hierarchical hidden Markov model with application to joint analysis of ChIP-chip and ChIP-seq data.

Choi H, Nesvizhskii AI, Ghosh D, Qin ZS. Choi H, et al. Among authors: nesvizhskii ai. Bioinformatics. 2009 Jul 15;25(14):1715-21. doi: 10.1093/bioinformatics/btp312. Epub 2009 May 14. Bioinformatics. 2009. PMID: 19447789 Free PMC article.

10

A global protein kinase and phosphatase interaction network in yeast.

Breitkreutz A, Choi H, Sharom JR, Boucher L, Neduva V, Larsen B, Lin ZY, Breitkreutz BJ, Stark C, Liu G, Ahn J, Dewar-Darch D, Reguly T, Tang X, Almeida R, Qin ZS, Pawson T, Gingras AC, Nesvizhskii AI, Tyers M. Breitkreutz A, et al. Among authors: nesvizhskii ai. Science. 2010 May 21;328(5981):1043-6. doi: 10.1126/science.1176495. Science. 2010. PMID: 20489023 Free PMC article.

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