Bernt M - Search Results

1

Bioinformatics methods for the comparative analysis of metazoan mitochondrial genome sequences.

Bernt M, Braband A, Middendorf M, Misof B, Rota-Stabelli O, Stadler PF. Bernt M, et al. Mol Phylogenet Evol. 2013 Nov;69(2):320-7. doi: 10.1016/j.ympev.2012.09.019. Epub 2012 Sep 28. Mol Phylogenet Evol. 2013. PMID: 23023207 Review.

2

Genome rearrangement based on reversals that preserve conserved intervals.

Bernt M, Merkle D, Middendorf M. Bernt M, et al. IEEE/ACM Trans Comput Biol Bioinform. 2006 Jul-Sep;3(3):275-88. doi: 10.1109/TCBB.2006.38. IEEE/ACM Trans Comput Biol Bioinform. 2006. PMID: 17048465

3

Using median sets for inferring phylogenetic trees.

Bernt M, Merkle D, Middendorf M. Bernt M, et al. Bioinformatics. 2007 Jan 15;23(2):e129-35. doi: 10.1093/bioinformatics/btl300. Bioinformatics. 2007. PMID: 17237080

4

CREx: inferring genomic rearrangements based on common intervals.

Bernt M, Merkle D, Ramsch K, Fritzsch G, Perseke M, Bernhard D, Schlegel M, Stadler PF, Middendorf M. Bernt M, et al. Bioinformatics. 2007 Nov 1;23(21):2957-8. doi: 10.1093/bioinformatics/btm468. Epub 2007 Sep 25. Bioinformatics. 2007. PMID: 17895271

5

Evolution of mitochondrial gene orders in echinoderms.

Perseke M, Fritzsch G, Ramsch K, Bernt M, Merkle D, Middendorf M, Bernhard D, Stadler PF, Schlegel M. Perseke M, et al. Among authors: bernt m. Mol Phylogenet Evol. 2008 May;47(2):855-64. doi: 10.1016/j.ympev.2007.11.034. Epub 2007 Dec 15. Mol Phylogenet Evol. 2008. PMID: 18280182

6

Solving the preserving reversal median problem.

Bernt M, Merkle D, Middendorf M. Bernt M, et al. IEEE/ACM Trans Comput Biol Bioinform. 2008 Jul-Sep;5(3):332-47. doi: 10.1109/TCBB.2008.39. IEEE/ACM Trans Comput Biol Bioinform. 2008. PMID: 18670038

7

The enigmatic mitochondrial genome of Rhabdopleura compacta (Pterobranchia) reveals insights into selection of an efficient tRNA system and supports monophyly of Ambulacraria.

Perseke M, Hetmank J, Bernt M, Stadler PF, Schlegel M, Bernhard D. Perseke M, et al. Among authors: bernt m. BMC Evol Biol. 2011 May 20;11:134. doi: 10.1186/1471-2148-11-134. BMC Evol Biol. 2011. PMID: 21599892 Free PMC article.

8

Improved systematic tRNA gene annotation allows new insights into the evolution of mitochondrial tRNA structures and into the mechanisms of mitochondrial genome rearrangements.

Jühling F, Pütz J, Bernt M, Donath A, Middendorf M, Florentz C, Stadler PF. Jühling F, et al. Among authors: bernt m. Nucleic Acids Res. 2012 Apr;40(7):2833-45. doi: 10.1093/nar/gkr1131. Epub 2011 Dec 1. Nucleic Acids Res. 2012. PMID: 22139921 Free PMC article.

9

A method for computing an inventory of metazoan mitochondrial gene order rearrangements.

Bernt M, Middendorf M. Bernt M, et al. BMC Bioinformatics. 2011 Oct 5;12 Suppl 9(Suppl 9):S6. doi: 10.1186/1471-2105-12-S9-S6. BMC Bioinformatics. 2011. PMID: 22151086 Free PMC article.

10

MITOS: improved de novo metazoan mitochondrial genome annotation.

Bernt M, Donath A, Jühling F, Externbrink F, Florentz C, Fritzsch G, Pütz J, Middendorf M, Stadler PF. Bernt M, et al. Mol Phylogenet Evol. 2013 Nov;69(2):313-9. doi: 10.1016/j.ympev.2012.08.023. Epub 2012 Sep 7. Mol Phylogenet Evol. 2013. PMID: 22982435

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