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Achieving high accuracy prediction of minimotifs.
Mi T, Rajasekaran S, Merlin JC, Gryk M, Schiller MR. Mi T, et al. Among authors: schiller mr. PLoS One. 2012;7(9):e45589. doi: 10.1371/journal.pone.0045589. Epub 2012 Sep 27. PLoS One. 2012. PMID: 23029121 Free PMC article.
High-performance exact algorithms for motif search.
Rajasekaran S, Balla S, Huang CH, Thapar V, Gryk M, Maciejewski M, Schiller M. Rajasekaran S, et al. J Clin Monit Comput. 2005 Oct;19(4-5):319-28. doi: 10.1007/s10877-005-0677-y. J Clin Monit Comput. 2005. PMID: 16328946
Minimotif Miner: a tool for investigating protein function.
Balla S, Thapar V, Verma S, Luong T, Faghri T, Huang CH, Rajasekaran S, del Campo JJ, Shinn JH, Mohler WA, Maciejewski MW, Gryk MR, Piccirillo B, Schiller SR, Schiller MR. Balla S, et al. Among authors: schiller sr, schiller mr. Nat Methods. 2006 Mar;3(3):175-7. doi: 10.1038/nmeth856. Nat Methods. 2006. PMID: 16489333
Minimotif miner 2nd release: a database and web system for motif search.
Rajasekaran S, Balla S, Gradie P, Gryk MR, Kadaveru K, Kundeti V, Maciejewski MW, Mi T, Rubino N, Vyas J, Schiller MR. Rajasekaran S, et al. Among authors: schiller mr. Nucleic Acids Res. 2009 Jan;37(Database issue):D185-90. doi: 10.1093/nar/gkn865. Epub 2008 Oct 31. Nucleic Acids Res. 2009. PMID: 18978024 Free PMC article.
A proposed syntax for Minimotif Semantics, version 1.
Vyas J, Nowling RJ, Maciejewski MW, Rajasekaran S, Gryk MR, Schiller MR. Vyas J, et al. Among authors: schiller mr. BMC Genomics. 2009 Aug 5;10:360. doi: 10.1186/1471-2164-10-360. BMC Genomics. 2009. PMID: 19656396 Free PMC article.
MimoSA: a system for minimotif annotation.
Vyas J, Nowling RJ, Meusburger T, Sargeant D, Kadaveru K, Gryk MR, Kundeti V, Rajasekaran S, Schiller MR. Vyas J, et al. Among authors: schiller mr. BMC Bioinformatics. 2010 Jun 16;11:328. doi: 10.1186/1471-2105-11-328. BMC Bioinformatics. 2010. PMID: 20565705 Free PMC article.
A computational tool for identifying minimotifs in protein-protein interactions and improving the accuracy of minimotif predictions.
Rajasekaran S, Merlin JC, Kundeti V, Mi T, Oommen A, Vyas J, Alaniz I, Chung K, Chowdhury F, Deverasatty S, Irvey TM, Lacambacal D, Lara D, Panchangam S, Rathnayake V, Watts P, Schiller MR. Rajasekaran S, et al. Among authors: schiller mr. Proteins. 2011 Jan;79(1):153-64. doi: 10.1002/prot.22868. Epub 2010 Oct 11. Proteins. 2011. PMID: 20938975 Free PMC article.
117 results