Xie XS - Search Results

1

Regulation of a viral proteinase by a peptide and DNA in one-dimensional space: II. adenovirus proteinase is activated in an unusual one-dimensional biochemical reaction.

Graziano V, Luo G, Blainey PC, Pérez-Berná AJ, McGrath WJ, Flint SJ, San Martín C, Xie XS, Mangel WF. Graziano V, et al. Among authors: xie xs. J Biol Chem. 2013 Jan 18;288(3):2068-80. doi: 10.1074/jbc.M112.407312. Epub 2012 Oct 7. J Biol Chem. 2013. PMID: 23043137 Free PMC article.

2

Regulation of a viral proteinase by a peptide and DNA in one-dimensional space: I. binding to DNA AND to hexon of the precursor to protein VI, pVI, of human adenovirus.

Graziano V, McGrath WJ, Suomalainen M, Greber UF, Freimuth P, Blainey PC, Luo G, Xie XS, Mangel WF. Graziano V, et al. Among authors: xie xs. J Biol Chem. 2013 Jan 18;288(3):2059-67. doi: 10.1074/jbc.M112.377150. Epub 2012 Oct 7. J Biol Chem. 2013. PMID: 23043136 Free PMC article.

3

Regulation of a viral proteinase by a peptide and DNA in one-dimensional space: IV. viral proteinase slides along DNA to locate and process its substrates.

Blainey PC, Graziano V, Pérez-Berná AJ, McGrath WJ, Flint SJ, San Martín C, Xie XS, Mangel WF. Blainey PC, et al. Among authors: xie xs. J Biol Chem. 2013 Jan 18;288(3):2092-102. doi: 10.1074/jbc.M112.407460. Epub 2012 Oct 7. J Biol Chem. 2013. PMID: 23043138 Free PMC article.

4

Nonspecifically bound proteins spin while diffusing along DNA.

Blainey PC, Luo G, Kou SC, Mangel WF, Verdine GL, Bagchi B, Xie XS. Blainey PC, et al. Among authors: xie xs. Nat Struct Mol Biol. 2009 Dec;16(12):1224-9. doi: 10.1038/nsmb.1716. Epub 2009 Nov 8. Nat Struct Mol Biol. 2009. PMID: 19898474 Free PMC article.

5

Diffusion constant of a nonspecifically bound protein undergoing curvilinear motion along DNA.

Bagchi B, Blainey PC, Xie XS. Bagchi B, et al. Among authors: xie xs. J Phys Chem B. 2008 May 15;112(19):6282-4. doi: 10.1021/jp077568f. Epub 2008 Mar 6. J Phys Chem B. 2008. PMID: 18321088

6

A base-excision DNA-repair protein finds intrahelical lesion bases by fast sliding in contact with DNA.

Blainey PC, van Oijen AM, Banerjee A, Verdine GL, Xie XS. Blainey PC, et al. Among authors: xie xs. Proc Natl Acad Sci U S A. 2006 Apr 11;103(15):5752-7. doi: 10.1073/pnas.0509723103. Epub 2006 Apr 3. Proc Natl Acad Sci U S A. 2006. PMID: 16585517 Free PMC article.

7

Multiplexed single-molecule assay for enzymatic activity on flow-stretched DNA.

Kim S, Blainey PC, Schroeder CM, Xie XS. Kim S, et al. Among authors: xie xs. Nat Methods. 2007 May;4(5):397-9. doi: 10.1038/nmeth1037. Epub 2007 Apr 15. Nat Methods. 2007. PMID: 17435763

8

Single-molecule kinetics of lambda exonuclease reveal base dependence and dynamic disorder.

van Oijen AM, Blainey PC, Crampton DJ, Richardson CC, Ellenberger T, Xie XS. van Oijen AM, et al. Among authors: xie xs. Science. 2003 Aug 29;301(5637):1235-8. doi: 10.1126/science.1084387. Science. 2003. PMID: 12947199

9

Dynamic distance disorder in proteins is caused by trapping.

Luo G, Andricioaei I, Xie XS, Karplus M. Luo G, et al. Among authors: xie xs. J Phys Chem B. 2006 May 18;110(19):9363-7. doi: 10.1021/jp057497p. J Phys Chem B. 2006. PMID: 16686476

10

Single-molecule and ensemble fluorescence assays for a functionally important conformational change in T7 DNA polymerase.

Luo G, Wang M, Konigsberg WH, Xie XS. Luo G, et al. Among authors: xie xs. Proc Natl Acad Sci U S A. 2007 Jul 31;104(31):12610-5. doi: 10.1073/pnas.0700920104. Epub 2007 Jul 18. Proc Natl Acad Sci U S A. 2007. PMID: 17640918 Free PMC article.

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