Prohaska SJ - Search Results

1

A global genome segmentation method for exploration of epigenetic patterns.

Steiner L, Hopp L, Wirth H, Galle J, Binder H, Prohaska SJ, Rohlf T. Steiner L, et al. Among authors: prohaska sj. PLoS One. 2012;7(10):e46811. doi: 10.1371/journal.pone.0046811. Epub 2012 Oct 12. PLoS One. 2012. PMID: 23077526 Free PMC article.

2

Proteinortho: detection of (co-)orthologs in large-scale analysis.

Lechner M, Findeiss S, Steiner L, Marz M, Stadler PF, Prohaska SJ. Lechner M, et al. Among authors: prohaska sj. BMC Bioinformatics. 2011 Apr 28;12:124. doi: 10.1186/1471-2105-12-124. BMC Bioinformatics. 2011. PMID: 21526987 Free PMC article.

3

Modeling the dynamic epigenome: from histone modifications towards self-organizing chromatin.

Rohlf T, Steiner L, Przybilla J, Prohaska S, Binder H, Galle J. Rohlf T, et al. Epigenomics. 2012 Apr;4(2):205-19. doi: 10.2217/epi.11.117. Epigenomics. 2012. PMID: 22449191

4

Transcriptional regulation by histone modifications: towards a theory of chromatin re-organization during stem cell differentiation.

Binder H, Steiner L, Przybilla J, Rohlf T, Prohaska S, Galle J. Binder H, et al. Phys Biol. 2013 Apr;10(2):026006. doi: 10.1088/1478-3975/10/2/026006. Epub 2013 Mar 12. Phys Biol. 2013. PMID: 23481318

5

The ancestor of modern Holozoa acquired the CCA-adding enzyme from Alphaproteobacteria by horizontal gene transfer.

Betat H, Mede T, Tretbar S, Steiner L, Stadler PF, Mörl M, Prohaska SJ. Betat H, et al. Among authors: prohaska sj. Nucleic Acids Res. 2015 Aug 18;43(14):6739-46. doi: 10.1093/nar/gkv631. Epub 2015 Jun 27. Nucleic Acids Res. 2015. PMID: 26117543 Free PMC article.

6

Chromatin computation: epigenetic inheritance as a pattern reconstruction problem.

Arnold C, Stadler PF, Prohaska SJ. Arnold C, et al. Among authors: prohaska sj. J Theor Biol. 2013 Nov 7;336:61-74. doi: 10.1016/j.jtbi.2013.07.012. Epub 2013 Jul 20. J Theor Biol. 2013. PMID: 23880640

7

Evolution and quantitative comparison of genome-wide protein domain distributions.

Parikesit AA, Stadler PF, Prohaska SJ. Parikesit AA, et al. Among authors: prohaska sj. Genes (Basel). 2011 Nov 9;2(4):912-24. doi: 10.3390/genes2040912. Genes (Basel). 2011. PMID: 24710298 Free PMC article.

8

The CHR site: definition and genome-wide identification of a cell cycle transcriptional element.

Müller GA, Wintsche A, Stangner K, Prohaska SJ, Stadler PF, Engeland K. Müller GA, et al. Among authors: prohaska sj. Nucleic Acids Res. 2014;42(16):10331-50. doi: 10.1093/nar/gku696. Epub 2014 Aug 8. Nucleic Acids Res. 2014. PMID: 25106871 Free PMC article.

9

Orthology detection combining clustering and synteny for very large datasets.

Lechner M, Hernandez-Rosales M, Doerr D, Wieseke N, Thévenin A, Stoye J, Hartmann RK, Prohaska SJ, Stadler PF. Lechner M, et al. Among authors: prohaska sj. PLoS One. 2014 Aug 19;9(8):e105015. doi: 10.1371/journal.pone.0105015. eCollection 2014. PLoS One. 2014. PMID: 25137074 Free PMC article.

10

The relativity of biological function.

Laubichler MD, Stadler PF, Prohaska SJ, Nowick K. Laubichler MD, et al. Among authors: prohaska sj. Theory Biosci. 2015 Dec;134(3-4):143-7. doi: 10.1007/s12064-015-0215-5. Epub 2015 Oct 8. Theory Biosci. 2015. PMID: 26449352

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