Huang TH - Search Results

1

Integrative genome-wide chromatin signature analysis using finite mixture models.

Taslim C, Lin S, Huang K, Huang TH. Taslim C, et al. Among authors: huang k, huang th. BMC Genomics. 2012;13 Suppl 6(Suppl 6):S3. doi: 10.1186/1471-2164-13-S6-S3. Epub 2012 Oct 26. BMC Genomics. 2012. PMID: 23134707 Free PMC article.

2

Comparative study on ChIP-seq data: normalization and binding pattern characterization.

Taslim C, Wu J, Yan P, Singer G, Parvin J, Huang T, Lin S, Huang K. Taslim C, et al. Bioinformatics. 2009 Sep 15;25(18):2334-40. doi: 10.1093/bioinformatics/btp384. Epub 2009 Jun 26. Bioinformatics. 2009. PMID: 19561022 Free PMC article.

3

DIME: R-package for identifying differential ChIP-seq based on an ensemble of mixture models.

Taslim C, Huang T, Lin S. Taslim C, et al. Bioinformatics. 2011 Jun 1;27(11):1569-70. doi: 10.1093/bioinformatics/btr165. Epub 2011 Apr 5. Bioinformatics. 2011. PMID: 21471015 Free PMC article.

4

Analyzing ChIP-seq data: preprocessing, normalization, differential identification, and binding pattern characterization.

Taslim C, Huang K, Huang T, Lin S. Taslim C, et al. Methods Mol Biol. 2012;802:275-91. doi: 10.1007/978-1-61779-400-1_18. Methods Mol Biol. 2012. PMID: 22130887

5

Comparing multiple ChIP-sequencing experiments.

Ozer HG, Huang YW, Wu J, Parvin JD, Huang TH, Huang K. Ozer HG, et al. Among authors: huang th, huang k, huang yw. J Bioinform Comput Biol. 2011 Apr;9(2):269-82. doi: 10.1142/s0219720011005483. J Bioinform Comput Biol. 2011. PMID: 21523932 Free PMC article.

6

Integrated analysis identifies a class of androgen-responsive genes regulated by short combinatorial long-range mechanism facilitated by CTCF.

Taslim C, Chen Z, Huang K, Huang TH, Wang Q, Lin S. Taslim C, et al. Among authors: huang k, huang th. Nucleic Acids Res. 2012 Jun;40(11):4754-64. doi: 10.1093/nar/gks139. Epub 2012 Feb 16. Nucleic Acids Res. 2012. PMID: 22344698 Free PMC article.

7

Gamma-Normal-Gamma mixture model for detecting differentially methylated loci in three breast cancer cell lines.

Khalili A, Potter D, Yan P, Li L, Gray J, Huang T, Lin S. Khalili A, et al. Cancer Inform. 2007 Feb 7;3:43-54. Cancer Inform. 2007. PMID: 19455234 Free PMC article.

8

A Robust Unified Approach to Analyzing Methylation and Gene Expression Data.

Khalili A, Huang T, Lin S. Khalili A, et al. Comput Stat Data Anal. 2009 Mar 15;53(5):1701-1710. doi: 10.1016/j.csda.2008.07.010. Comput Stat Data Anal. 2009. PMID: 20161265 Free PMC article.

9

A signal processing approach for enriched region detection in RNA polymerase II ChIP-seq data.

Han Z, Tian L, Pécot T, Huang T, Machiraju R, Huang K. Han Z, et al. BMC Bioinformatics. 2012 Mar 13;13 Suppl 2(Suppl 2):S2. doi: 10.1186/1471-2105-13-S2-S2. BMC Bioinformatics. 2012. PMID: 22536865 Free PMC article.

10

Enabling Data Analysis on High-Throughput Data in Large Data Depository Using Web-Based Analysis Platform - A Case Study on Integrating QUEST with GenePattern in Epigenetics Research.

Camerlengo T, Ozer HG, Yan P, Parvin J, Huang T, Huang K, Perez F, Teng M, Li L, Liu Y, Kurc T. Camerlengo T, et al. Proceedings (IEEE Int Conf Bioinformatics Biomed). 2009 Nov 1;1-4(Nov 2009):392-395. doi: 10.1109/BIBM.2009.84. Proceedings (IEEE Int Conf Bioinformatics Biomed). 2009. PMID: 21151835 Free PMC article.

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