Deutsch EW - Search Results

1

Hydra: a scalable proteomic search engine which utilizes the Hadoop distributed computing framework.

Lewis S, Csordas A, Killcoyne S, Hermjakob H, Hoopmann MR, Moritz RL, Deutsch EW, Boyle J. Lewis S, et al. Among authors: deutsch ew. BMC Bioinformatics. 2012 Dec 5;13:324. doi: 10.1186/1471-2105-13-324. BMC Bioinformatics. 2012. PMID: 23216909 Free PMC article.

2

A common open representation of mass spectrometry data and its application to proteomics research.

Pedrioli PG, Eng JK, Hubley R, Vogelzang M, Deutsch EW, Raught B, Pratt B, Nilsson E, Angeletti RH, Apweiler R, Cheung K, Costello CE, Hermjakob H, Huang S, Julian RK, Kapp E, McComb ME, Oliver SG, Omenn G, Paton NW, Simpson R, Smith R, Taylor CF, Zhu W, Aebersold R. Pedrioli PG, et al. Among authors: deutsch ew. Nat Biotechnol. 2004 Nov;22(11):1459-66. doi: 10.1038/nbt1031. Nat Biotechnol. 2004. PMID: 15529173

3

SBEAMS-Microarray: database software supporting genomic expression analyses for systems biology.

Marzolf B, Deutsch EW, Moss P, Campbell D, Johnson MH, Galitski T. Marzolf B, et al. Among authors: deutsch ew. BMC Bioinformatics. 2006 Jun 6;7:286. doi: 10.1186/1471-2105-7-286. BMC Bioinformatics. 2006. PMID: 16756676 Free PMC article.

4

Development and validation of a spectral library searching method for peptide identification from MS/MS.

Lam H, Deutsch EW, Eddes JS, Eng JK, King N, Stein SE, Aebersold R. Lam H, et al. Among authors: deutsch ew. Proteomics. 2007 Mar;7(5):655-67. doi: 10.1002/pmic.200600625. Proteomics. 2007. PMID: 17295354

5

Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics.

Deutsch EW, Lam H, Aebersold R. Deutsch EW, et al. Physiol Genomics. 2008 Mar 14;33(1):18-25. doi: 10.1152/physiolgenomics.00298.2007. Epub 2008 Jan 22. Physiol Genomics. 2008. PMID: 18212004 Review.

6

PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows.

Deutsch EW, Lam H, Aebersold R. Deutsch EW, et al. EMBO Rep. 2008 May;9(5):429-34. doi: 10.1038/embor.2008.56. EMBO Rep. 2008. PMID: 18451766 Free PMC article. Review.

7

Annual spring meeting of the Proteomics Standards Initiative 23-25 April 2008, Toledo, Spain.

Orchard S, Albar JP, Deutsch EW, Binz PA, Jones AR, Creasy D, Hermjakob H. Orchard S, et al. Among authors: deutsch ew. Proteomics. 2008 Oct;8(20):4168-72. doi: 10.1002/pmic.200800555. Proteomics. 2008. PMID: 18814335

8

The Drosophila melanogaster PeptideAtlas facilitates the use of peptide data for improved fly proteomics and genome annotation.

Loevenich SN, Brunner E, King NL, Deutsch EW, Stein SE; FlyBase Consortium; Aebersold R, Hafen E. Loevenich SN, et al. Among authors: deutsch ew. BMC Bioinformatics. 2009 Feb 11;10:59. doi: 10.1186/1471-2105-10-59. BMC Bioinformatics. 2009. PMID: 19210778 Free PMC article.

9

A HUPO test sample study reveals common problems in mass spectrometry-based proteomics.

Bell AW, Deutsch EW, Au CE, Kearney RE, Beavis R, Sechi S, Nilsson T, Bergeron JJ; HUPO Test Sample Working Group. Bell AW, et al. Among authors: deutsch ew. Nat Methods. 2009 Jun;6(6):423-30. doi: 10.1038/nmeth.1333. Nat Methods. 2009. PMID: 19448641 Free PMC article.

10

Annual spring meeting of the Proteomics Standards Initiative.

Orchard S, Deutsch EW, Binz PA, Jones AR, Creasy D, Montechi-Palazzi L, Corthals G, Hermjakob H. Orchard S, et al. Among authors: deutsch ew. Proteomics. 2009 Oct;9(19):4429-32. doi: 10.1002/pmic.200900407. Proteomics. 2009. PMID: 19670378

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