Marenduzzo D - Search Results

1

Space exploration by the promoter of a long human gene during one transcription cycle.

Larkin JD, Papantonis A, Cook PR, Marenduzzo D. Larkin JD, et al. Among authors: marenduzzo d. Nucleic Acids Res. 2013 Feb 1;41(4):2216-27. doi: 10.1093/nar/gks1441. Epub 2013 Jan 8. Nucleic Acids Res. 2013. PMID: 23303786 Free PMC article.

2

Modeling a self-avoiding chromatin loop: relation to the packing problem, action-at-a-distance, and nuclear context.

Bon M, Marenduzzo D, Cook PR. Bon M, et al. Among authors: marenduzzo d. Structure. 2006 Feb;14(2):197-204. doi: 10.1016/j.str.2005.10.016. Structure. 2006. PMID: 16472739 Free article.

3

Entropy-driven genome organization.

Marenduzzo D, Micheletti C, Cook PR. Marenduzzo D, et al. Biophys J. 2006 May 15;90(10):3712-21. doi: 10.1529/biophysj.105.077685. Epub 2006 Feb 24. Biophys J. 2006. PMID: 16500976 Free PMC article.

4

The depletion attraction: an underappreciated force driving cellular organization.

Marenduzzo D, Finan K, Cook PR. Marenduzzo D, et al. J Cell Biol. 2006 Dec 4;175(5):681-6. doi: 10.1083/jcb.200609066. J Cell Biol. 2006. PMID: 17145959 Free PMC article. Review.

5

Depletion effects and loop formation in self-avoiding polymers.

Toan NM, Marenduzzo D, Cook PR, Micheletti C. Toan NM, et al. Among authors: marenduzzo d. Phys Rev Lett. 2006 Oct 27;97(17):178302. doi: 10.1103/PhysRevLett.97.178302. Epub 2006 Oct 26. Phys Rev Lett. 2006. PMID: 17155512

6

What are the molecular ties that maintain genomic loops?

Marenduzzo D, Faro-Trindade I, Cook PR. Marenduzzo D, et al. Trends Genet. 2007 Mar;23(3):126-33. doi: 10.1016/j.tig.2007.01.007. Epub 2007 Feb 5. Trends Genet. 2007. PMID: 17280735

7

Entropic organization of interphase chromosomes.

Cook PR, Marenduzzo D. Cook PR, et al. Among authors: marenduzzo d. J Cell Biol. 2009 Sep 21;186(6):825-34. doi: 10.1083/jcb.200903083. Epub 2009 Sep 14. J Cell Biol. 2009. PMID: 19752020 Free PMC article.

8

Non-specific (entropic) forces as major determinants of the structure of mammalian chromosomes.

Finan K, Cook PR, Marenduzzo D. Finan K, et al. Among authors: marenduzzo d. Chromosome Res. 2011 Jan;19(1):53-61. doi: 10.1007/s10577-010-9150-y. Chromosome Res. 2011. PMID: 20714801 Review.

9

Nonspecific bridging-induced attraction drives clustering of DNA-binding proteins and genome organization.

Brackley CA, Taylor S, Papantonis A, Cook PR, Marenduzzo D. Brackley CA, et al. Among authors: marenduzzo d. Proc Natl Acad Sci U S A. 2013 Sep 17;110(38):E3605-11. doi: 10.1073/pnas.1302950110. Epub 2013 Sep 3. Proc Natl Acad Sci U S A. 2013. PMID: 24003126 Free PMC article.

10

A simple model for DNA bridging proteins and bacterial or human genomes: bridging-induced attraction and genome compaction.

Johnson J, Brackley CA, Cook PR, Marenduzzo D. Johnson J, et al. Among authors: marenduzzo d. J Phys Condens Matter. 2015 Feb 18;27(6):064119. doi: 10.1088/0953-8984/27/6/064119. Epub 2015 Jan 7. J Phys Condens Matter. 2015. PMID: 25563801 Free article.

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