Siepel A - Search Results

1

Inference of natural selection from interspersed genomic elements based on polymorphism and divergence.

Gronau I, Arbiza L, Mohammed J, Siepel A. Gronau I, et al. Among authors: siepel a. Mol Biol Evol. 2013 May;30(5):1159-71. doi: 10.1093/molbev/mst019. Epub 2013 Feb 5. Mol Biol Evol. 2013. PMID: 23386628 Free PMC article.

2

Model-based characterization of the equilibrium dynamics of transcription initiation and promoter-proximal pausing in human cells.

Zhao Y, Liu L, Hassett R, Siepel A. Zhao Y, et al. Among authors: siepel a. Nucleic Acids Res. 2023 Nov 27;51(21):e106. doi: 10.1093/nar/gkad843. Nucleic Acids Res. 2023. PMID: 37889042 Free PMC article.

3

Patterns of positive selection in six Mammalian genomes.

Kosiol C, Vinar T, da Fonseca RR, Hubisz MJ, Bustamante CD, Nielsen R, Siepel A. Kosiol C, et al. Among authors: siepel a. PLoS Genet. 2008 Aug 1;4(8):e1000144. doi: 10.1371/journal.pgen.1000144. PLoS Genet. 2008. PMID: 18670650 Free PMC article.

4

Phylogenomics of primates and their ancestral populations.

Siepel A. Siepel A. Genome Res. 2009 Nov;19(11):1929-41. doi: 10.1101/gr.084228.108. Epub 2009 Oct 3. Genome Res. 2009. PMID: 19801602 Free PMC article.

5

Comparative genomic analysis of the Streptococcus dysgalactiae species group: gene content, molecular adaptation, and promoter evolution.

Suzuki H, Lefébure T, Hubisz MJ, Pavinski Bitar P, Lang P, Siepel A, Stanhope MJ. Suzuki H, et al. Among authors: siepel a. Genome Biol Evol. 2011;3:168-85. doi: 10.1093/gbe/evr006. Epub 2011 Jan 31. Genome Biol Evol. 2011. PMID: 21282711 Free PMC article.

6

Analyses of X-linked and autosomal genetic variation in population-scale whole genome sequencing.

Gottipati S, Arbiza L, Siepel A, Clark AG, Keinan A. Gottipati S, et al. Among authors: siepel a. Nat Genet. 2011 Jul 24;43(8):741-3. doi: 10.1038/ng.877. Nat Genet. 2011. PMID: 21775991 Free PMC article.

7

Bayesian inference of ancient human demography from individual genome sequences.

Gronau I, Hubisz MJ, Gulko B, Danko CG, Siepel A. Gronau I, et al. Among authors: siepel a. Nat Genet. 2011 Sep 18;43(10):1031-4. doi: 10.1038/ng.937. Nat Genet. 2011. PMID: 21926973 Free PMC article.

8

Replacing and additive horizontal gene transfer in Streptococcus.

Choi SC, Rasmussen MD, Hubisz MJ, Gronau I, Stanhope MJ, Siepel A. Choi SC, et al. Among authors: siepel a. Mol Biol Evol. 2012 Nov;29(11):3309-20. doi: 10.1093/molbev/mss138. Epub 2012 May 21. Mol Biol Evol. 2012. PMID: 22617954 Free PMC article.

9

Genome-wide inference of natural selection on human transcription factor binding sites.

Arbiza L, Gronau I, Aksoy BA, Hubisz MJ, Gulko B, Keinan A, Siepel A. Arbiza L, et al. Among authors: siepel a. Nat Genet. 2013 Jul;45(7):723-9. doi: 10.1038/ng.2658. Epub 2013 Jun 9. Nat Genet. 2013. PMID: 23749186 Free PMC article.

10

The impact of age, biogenesis, and genomic clustering on Drosophila microRNA evolution.

Mohammed J, Flynt AS, Siepel A, Lai EC. Mohammed J, et al. Among authors: siepel a. RNA. 2013 Sep;19(9):1295-308. doi: 10.1261/rna.039248.113. Epub 2013 Jul 23. RNA. 2013. PMID: 23882112 Free PMC article.

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