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From molecules to dynamic biological communities.
McDonald D, Vázquez-Baeza Y, Walters WA, Caporaso JG, Knight R. McDonald D, et al. Among authors: caporaso jg. Biol Philos. 2013 Mar;28(2):241-259. doi: 10.1007/s10539-013-9364-4. Epub 2013 Feb 5. Biol Philos. 2013. PMID: 23483075 Free PMC article.
Facilitating bioinformatics reproducibility with QIIME 2 Provenance Replay.
Keefe CR, Dillon MR, Gehret E, Herman C, Jewell M, Wood CV, Bolyen E, Caporaso JG. Keefe CR, et al. Among authors: caporaso jg. PLoS Comput Biol. 2023 Nov 27;19(11):e1011676. doi: 10.1371/journal.pcbi.1011676. eCollection 2023 Nov. PLoS Comput Biol. 2023. PMID: 38011287 Free PMC article.
Pan-Enterovirus Characterization Reveals Cryptic Circulation of Clinically Relevant Subtypes in Arizona Wastewater.
Erickson DE, Simmons KM, Barrand ZA, Ridenour CL, Hawkinson PB, Lemke L, Sellner SP, Brock BN, Rivas AN, Sheridan K, Lemmer D, Yaglom HD, Porter WT, Belanger M, Torrey RM, Stills AJR, McCormack K, Black M, Holmes W, Rostain D, Mikus J, Sotelo K, Haq E, Neupane R, Weiss J, Johnson J, Collins C, Avalle S, White C, Howard BJ, Maltinsky SA, Whealy RN, Gordon NB, Sahl JW, Pearson T, Fofanov VY, Furstenau T, Driebe EM, Caporaso JG, Barber J, Terriquez J, Engelthaler DM, Hepp CM. Erickson DE, et al. Among authors: caporaso jg. medRxiv [Preprint]. 2024 Mar 20:2023.11.20.23297677. doi: 10.1101/2023.11.20.23297677. medRxiv. 2024. PMID: 38562876 Free PMC article. Preprint.
Origins of the genetic code: the escaped triplet theory.
Yarus M, Caporaso JG, Knight R. Yarus M, et al. Among authors: caporaso jg. Annu Rev Biochem. 2005;74:179-98. doi: 10.1146/annurev.biochem.74.082803.133119. Annu Rev Biochem. 2005. PMID: 15952885 Review.
PyCogent: a toolkit for making sense from sequence.
Knight R, Maxwell P, Birmingham A, Carnes J, Caporaso JG, Easton BC, Eaton M, Hamady M, Lindsay H, Liu Z, Lozupone C, McDonald D, Robeson M, Sammut R, Smit S, Wakefield MJ, Widmann J, Wikman S, Wilson S, Ying H, Huttley GA. Knight R, et al. Among authors: caporaso jg. Genome Biol. 2007;8(8):R171. doi: 10.1186/gb-2007-8-8-r171. Genome Biol. 2007. PMID: 17708774 Free PMC article.
128 results