El-Kebir M - Search Results

1

Computational modeling of tuberculous meningitis reveals an important role for tumor necrosis factor-α.

El-Kebir M, van der Kuip M, van Furth AM, Kirschner DE. El-Kebir M, et al. J Theor Biol. 2013 Jul 7;328:43-53. doi: 10.1016/j.jtbi.2013.03.008. Epub 2013 Mar 26. J Theor Biol. 2013. PMID: 23542051 Free PMC article.

2

A hybrid multi-compartment model of granuloma formation and T cell priming in tuberculosis.

Marino S, El-Kebir M, Kirschner D. Marino S, et al. J Theor Biol. 2011 Jul 7;280(1):50-62. doi: 10.1016/j.jtbi.2011.03.022. Epub 2011 Apr 1. J Theor Biol. 2011. PMID: 21443879 Free PMC article.

3

Multiscale computational modeling reveals a critical role for TNF-α receptor 1 dynamics in tuberculosis granuloma formation.

Fallahi-Sichani M, El-Kebir M, Marino S, Kirschner DE, Linderman JJ. Fallahi-Sichani M, et al. J Immunol. 2011 Mar 15;186(6):3472-83. doi: 10.4049/jimmunol.1003299. Epub 2011 Feb 14. J Immunol. 2011. PMID: 21321109 Free PMC article.

4

xHeinz: an algorithm for mining cross-species network modules under a flexible conservation model.

El-Kebir M, Soueidan H, Hume T, Beisser D, Dittrich M, Müller T, Blin G, Heringa J, Nikolski M, Wessels LF, Klau GW. El-Kebir M, et al. Bioinformatics. 2015 Oct 1;31(19):3147-55. doi: 10.1093/bioinformatics/btv316. Epub 2015 May 27. Bioinformatics. 2015. PMID: 26023104

5

Charge group partitioning in biomolecular simulation.

Canzar S, El-Kebir M, Pool R, Elbassioni K, Mark AE, Geerke DP, Stougie L, Klau GW. Canzar S, et al. J Comput Biol. 2013 Mar;20(3):188-98. doi: 10.1089/cmb.2012.0239. J Comput Biol. 2013. PMID: 23461571 Free PMC article.

6

Reconstruction of clonal trees and tumor composition from multi-sample sequencing data.

El-Kebir M, Oesper L, Acheson-Field H, Raphael BJ. El-Kebir M, et al. Bioinformatics. 2015 Jun 15;31(12):i62-70. doi: 10.1093/bioinformatics/btv261. Bioinformatics. 2015. PMID: 26072510 Free PMC article.

7

Phylogenetic Copy-Number Factorization of Multiple Tumor Samples.

Zaccaria S, El-Kebir M, Klau GW, Raphael BJ. Zaccaria S, et al. J Comput Biol. 2018 Jul;25(7):689-708. doi: 10.1089/cmb.2017.0253. Epub 2018 Apr 16. J Comput Biol. 2018. PMID: 29658782 Free PMC article.

8

NatalieQ: a web server for protein-protein interaction network querying.

El-Kebir M, Brandt BW, Heringa J, Klau GW. El-Kebir M, et al. BMC Syst Biol. 2014 Apr 1;8:40. doi: 10.1186/1752-0509-8-40. BMC Syst Biol. 2014. PMID: 24690407 Free PMC article.

9

metaModules identifies key functional subnetworks in microbiome-related disease.

May A, Brandt BW, El-Kebir M, Klau GW, Zaura E, Crielaard W, Heringa J, Abeln S. May A, et al. Bioinformatics. 2016 Jun 1;32(11):1678-85. doi: 10.1093/bioinformatics/btv526. Epub 2015 Sep 5. Bioinformatics. 2016. PMID: 26342232

10

eXamine: Visualizing annotated networks in Cytoscape.

Spohr P, Dinkla K, Klau GW, El-Kebir M. Spohr P, et al. F1000Res. 2018 Apr 30;7:519. doi: 10.12688/f1000research.14612.2. eCollection 2018. F1000Res. 2018. PMID: 29983924 Free PMC article.

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