He X - Search Results

1

CG methylated microarrays identify a novel methylated sequence bound by the CEBPB|ATF4 heterodimer that is active in vivo.

Mann IK, Chatterjee R, Zhao J, He X, Weirauch MT, Hughes TR, Vinson C. Mann IK, et al. Among authors: he x. Genome Res. 2013 Jun;23(6):988-97. doi: 10.1101/gr.146654.112. Epub 2013 Apr 16. Genome Res. 2013. PMID: 23590861 Free PMC article.

2

Overlapping ETS and CRE Motifs ((G/C)CGGAAGTGACGTCA) preferentially bound by GABPα and CREB proteins.

Chatterjee R, Zhao J, He X, Shlyakhtenko A, Mann I, Waterfall JJ, Meltzer P, Sathyanarayana BK, FitzGerald PC, Vinson C. Chatterjee R, et al. Among authors: he x. G3 (Bethesda). 2012 Oct;2(10):1243-56. doi: 10.1534/g3.112.004002. Epub 2012 Oct 1. G3 (Bethesda). 2012. PMID: 23050235 Free PMC article.

3

GABPα Binding to Overlapping ETS and CRE DNA Motifs Is Enhanced by CREB1: Custom DNA Microarrays.

He X, Syed KS, Tillo D, Mann I, Weirauch MT, Vinson C. He X, et al. G3 (Bethesda). 2015 Jul 16;5(9):1909-18. doi: 10.1534/g3.115.020248. G3 (Bethesda). 2015. PMID: 26185160 Free PMC article.

4

Methylated Cytosines Mutate to Transcription Factor Binding Sites that Drive Tetrapod Evolution.

He X, Tillo D, Vierstra J, Syed KS, Deng C, Ray GJ, Stamatoyannopoulos J, FitzGerald PC, Vinson C. He X, et al. Genome Biol Evol. 2015 Oct 27;7(11):3155-69. doi: 10.1093/gbe/evv205. Genome Biol Evol. 2015. PMID: 26507798 Free PMC article.

5

The Epstein-Barr Virus B-ZIP Protein Zta Recognizes Specific DNA Sequences Containing 5-Methylcytosine and 5-Hydroxymethylcytosine.

Tillo D, Ray S, Syed KS, Gaylor MR, He X, Wang J, Assad N, Durell SR, Porollo A, Weirauch MT, Vinson C. Tillo D, et al. Among authors: he x. Biochemistry. 2017 Nov 28;56(47):6200-6210. doi: 10.1021/acs.biochem.7b00741. Epub 2017 Nov 10. Biochemistry. 2017. PMID: 29072898 Free PMC article.

6

Contribution of nucleosome binding preferences and co-occurring DNA sequences to transcription factor binding.

He X, Chatterjee R, John S, Bravo H, Sathyanarayana BK, Biddie SC, FitzGerald PC, Stamatoyannopoulos JA, Hager GL, Vinson C. He X, et al. BMC Genomics. 2013 Jun 28;14:428. doi: 10.1186/1471-2164-14-428. BMC Genomics. 2013. PMID: 23805837 Free PMC article.

7

5-Hydroxymethylcytosine in E-box motifs ACAT|GTG and ACAC|GTG increases DNA-binding of the B-HLH transcription factor TCF4.

Khund-Sayeed S, He X, Holzberg T, Wang J, Rajagopal D, Upadhyay S, Durell SR, Mukherjee S, Weirauch MT, Rose R, Vinson C. Khund-Sayeed S, et al. Among authors: he x. Integr Biol (Camb). 2016 Sep 12;8(9):936-45. doi: 10.1039/c6ib00079g. Epub 2016 Aug 3. Integr Biol (Camb). 2016. PMID: 27485769 Free PMC article.

8

5-Methylcytosine (5mC) and 5-Hydroxymethylcytosine (5hmC) Enhance the DNA Binding of CREB1 to the C/EBP Half-Site Tetranucleotide GCAA.

Syed KS, He X, Tillo D, Wang J, Durell SR, Vinson C. Syed KS, et al. Among authors: he x. Biochemistry. 2016 Dec 13;55(49):6940-6948. doi: 10.1021/acs.biochem.6b00796. Epub 2016 Nov 29. Biochemistry. 2016. PMID: 27951657 Free PMC article.

9

Nucleosomes are enriched at the boundaries of hypomethylated regions (HMRs) in mouse dermal fibroblasts and keratinocytes.

He X, Chatterjee R, Tillo D, Smith A, FitzGerald P, Vinson C. He X, et al. Epigenetics Chromatin. 2014 Dec 2;7(1):34. doi: 10.1186/1756-8935-7-34. eCollection 2014. Epigenetics Chromatin. 2014. PMID: 25506399 Free PMC article.

10

High-resolution genome-wide DNA methylation maps of mouse primary female dermal fibroblasts and keratinocytes.

Chatterjee R, He X, Huang D, FitzGerald P, Smith A, Vinson C. Chatterjee R, et al. Among authors: he x. Epigenetics Chromatin. 2014 Dec 2;7:35. doi: 10.1186/1756-8935-7-35. eCollection 2014. Epigenetics Chromatin. 2014. PMID: 25699092 Free PMC article.

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