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Structure prediction for CASP8 with all-atom refinement using Rosetta.
Raman S, Vernon R, Thompson J, Tyka M, Sadreyev R, Pei J, Kim D, Kellogg E, DiMaio F, Lange O, Kinch L, Sheffler W, Kim BH, Das R, Grishin NV, Baker D. Raman S, et al. Among authors: dimaio f. Proteins. 2009;77 Suppl 9(0 9):89-99. doi: 10.1002/prot.22540. Proteins. 2009. PMID: 19701941 Free PMC article.
Analyses of subnanometer resolution cryo-EM density maps.
Baker ML, Baker MR, Hryc CF, Dimaio F. Baker ML, et al. Among authors: dimaio f. Methods Enzymol. 2010;483:1-29. doi: 10.1016/S0076-6879(10)83001-0. Methods Enzymol. 2010. PMID: 20888467 Free PMC article.
Alternate states of proteins revealed by detailed energy landscape mapping.
Tyka MD, Keedy DA, André I, Dimaio F, Song Y, Richardson DC, Richardson JS, Baker D. Tyka MD, et al. Among authors: dimaio f. J Mol Biol. 2011 Jan 14;405(2):607-18. doi: 10.1016/j.jmb.2010.11.008. Epub 2010 Nov 10. J Mol Biol. 2011. PMID: 21073878 Free PMC article.
Structural basis for scaffolding-mediated assembly and maturation of a dsDNA virus.
Chen DH, Baker ML, Hryc CF, DiMaio F, Jakana J, Wu W, Dougherty M, Haase-Pettingell C, Schmid MF, Jiang W, Baker D, King JA, Chiu W. Chen DH, et al. Among authors: dimaio f. Proc Natl Acad Sci U S A. 2011 Jan 25;108(4):1355-60. doi: 10.1073/pnas.1015739108. Epub 2011 Jan 10. Proc Natl Acad Sci U S A. 2011. PMID: 21220301 Free PMC article.
Cloning, expression, purification, crystallization and preliminary X-ray diffraction data of the Pyrococcus horikoshii RadA intein.
Lyskowski A, Oeemig JS, Jaakkonen A, Rommi K, DiMaio F, Zhou D, Kajander T, Baker D, Wlodawer A, Goldman A, Iwaï H. Lyskowski A, et al. Among authors: dimaio f. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 May 1;67(Pt 5):623-6. doi: 10.1107/S1744309111008372. Epub 2011 Apr 28. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011. PMID: 21543876 Free PMC article.
171 results