Levy R - Search Results

1

Towards a predictive systems-level model of the human microbiome: progress, challenges, and opportunities.

Greenblum S, Chiu HC, Levy R, Carr R, Borenstein E. Greenblum S, et al. Among authors: levy r. Curr Opin Biotechnol. 2013 Aug;24(4):810-20. doi: 10.1016/j.copbio.2013.04.001. Epub 2013 Apr 23. Curr Opin Biotechnol. 2013. PMID: 23623295 Free PMC article. Review.

2

Metabolic modeling of species interaction in the human microbiome elucidates community-level assembly rules.

Levy R, Borenstein E. Levy R, et al. Proc Natl Acad Sci U S A. 2013 Jul 30;110(31):12804-9. doi: 10.1073/pnas.1300926110. Epub 2013 Jul 15. Proc Natl Acad Sci U S A. 2013. PMID: 23858463 Free PMC article.

3

Metagenomic systems biology and metabolic modeling of the human microbiome: from species composition to community assembly rules.

Levy R, Borenstein E. Levy R, et al. Gut Microbes. 2014 Mar-Apr;5(2):265-70. doi: 10.4161/gmic.28261. Epub 2014 Feb 20. Gut Microbes. 2014. PMID: 24637600 Free PMC article.

4

Emergent biosynthetic capacity in simple microbial communities.

Chiu HC, Levy R, Borenstein E. Chiu HC, et al. Among authors: levy r. PLoS Comput Biol. 2014 Jul 3;10(7):e1003695. doi: 10.1371/journal.pcbi.1003695. eCollection 2014 Jul. PLoS Comput Biol. 2014. PMID: 24992662 Free PMC article.

5

Mapping the inner workings of the microbiome: genomic- and metagenomic-based study of metabolism and metabolic interactions in the human microbiome.

Manor O, Levy R, Borenstein E. Manor O, et al. Among authors: levy r. Cell Metab. 2014 Nov 4;20(5):742-752. doi: 10.1016/j.cmet.2014.07.021. Epub 2014 Aug 28. Cell Metab. 2014. PMID: 25176148 Free PMC article. Review.

6

Reverse Ecology: from systems to environments and back.

Levy R, Borenstein E. Levy R, et al. Adv Exp Med Biol. 2012;751:329-45. doi: 10.1007/978-1-4614-3567-9_15. Adv Exp Med Biol. 2012. PMID: 22821465

7

NetCooperate: a network-based tool for inferring host-microbe and microbe-microbe cooperation.

Levy R, Carr R, Kreimer A, Freilich S, Borenstein E. Levy R, et al. BMC Bioinformatics. 2015 May 17;16(1):164. doi: 10.1186/s12859-015-0588-y. BMC Bioinformatics. 2015. PMID: 25980407 Free PMC article.

8

Metagenomic evidence for taxonomic dysbiosis and functional imbalance in the gastrointestinal tracts of children with cystic fibrosis.

Manor O, Levy R, Pope CE, Hayden HS, Brittnacher MJ, Carr R, Radey MC, Hager KR, Heltshe SL, Ramsey BW, Miller SI, Hoffman LR, Borenstein E. Manor O, et al. Among authors: levy r. Sci Rep. 2016 Mar 4;6:22493. doi: 10.1038/srep22493. Sci Rep. 2016. PMID: 26940651 Free PMC article.

9

Multiplex targeted sequencing identifies recurrently mutated genes in autism spectrum disorders.

O'Roak BJ, Vives L, Fu W, Egertson JD, Stanaway IB, Phelps IG, Carvill G, Kumar A, Lee C, Ankenman K, Munson J, Hiatt JB, Turner EH, Levy R, O'Day DR, Krumm N, Coe BP, Martin BK, Borenstein E, Nickerson DA, Mefford HC, Doherty D, Akey JM, Bernier R, Eichler EE, Shendure J. O'Roak BJ, et al. Among authors: levy r. Science. 2012 Dec 21;338(6114):1619-22. doi: 10.1126/science.1227764. Epub 2012 Nov 15. Science. 2012. PMID: 23160955 Free PMC article.

10

Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations.

O'Roak BJ, Vives L, Girirajan S, Karakoc E, Krumm N, Coe BP, Levy R, Ko A, Lee C, Smith JD, Turner EH, Stanaway IB, Vernot B, Malig M, Baker C, Reilly B, Akey JM, Borenstein E, Rieder MJ, Nickerson DA, Bernier R, Shendure J, Eichler EE. O'Roak BJ, et al. Among authors: levy r. Nature. 2012 Apr 4;485(7397):246-50. doi: 10.1038/nature10989. Nature. 2012. PMID: 22495309 Free PMC article.

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